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Basic information

CohesinDB ID: CDBP00420898

Locus: chr21-44078553-44078867

Data sourse: ENCSR000BLD, ENCSR153HNT

Cell type: K-562, H1-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 62% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "4_Tx": 69%, "5_TxWk": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, POU5F1, ZNF263, CDK7, SOX2, ZFX, XBP1, SMAD3, ZSCAN5A, FOXA1, ZBTB33, ERG, RELA, HDGF, ZNF384, MYC, SMARCA4, CHD7, GRHL3, NKX2-1, GATA3, GABPA, TAL1, SUPT5H, GATA1, STAT5B, ZNF264, MYB, TRIM28, ZNF334, ZNF22, PHOX2B, RBM22, ARID5B, TBX21, LMO1, BRD4

Target gene symbol (double-evidenced CRMs): LRRC3,RRP1,CBS,TRAPPC10,UBE2G2,AGPAT3,COL18A1,PFKL,ITGB2,PKNOX1,DNMT3L,TSPEAR,TRPM2,ADARB1,PTTG1IP,GATD3A,SUMO3,CFAP410,POFUT2

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000160199, ENSG00000160200, ENSG00000160214, ENSG00000160216, ENSG00000160218, ENSG00000160221, ENSG00000142182, ENSG00000141959, ENSG00000160226, ENSG00000142185, ENSG00000160233, ENSG00000175894, ENSG00000184787, ENSG00000184900, ENSG00000183255, ENSG00000160255, ENSG00000197381, ENSG00000186866, ENSG00000182871,

eachgene

Deatailed information for cohesin site CDBP00420898