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Basic information

CohesinDB ID: CDBP00420906

Locus: chr21-44094969-44096191

Data sourse: GSE67783, GSE86191, GSE206145, GSE206145-NatGen2015, GSE62063, ENCSR153HNT, GSE116344, GSE165895

Cell type: RPE, Fibroblast, HCT-116, RH4, Ramos, K-562, HSPC, HFFc6

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 2% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.911

Subunit: NIPBL,SA1,Rad21,SMC1,Mau2

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 62% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "5_TxWk": 45%, "4_Tx": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: GLIS1, STAT3, FOXA2, STAT5B, MYC, SCRT2, ZNF30, ILF3, FOXA1, ZZZ3, PHOX2B, CTCF, SUPT5H, SPI1

Target gene symbol (double-evidenced CRMs): TRPM2,UBE2G2,ADARB1,GATD3A,PFKL,RRP1,CBS,CFAP410,TSPEAR,SUMO3,PTTG1IP,AGPAT3,LRRC3,DNMT3L,ITGB2,TRAPPC10,POFUT2,PKNOX1,COL18A1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 6

Number of somatic mutations (non-coding): 6

Related genes and loops

Related gene: ENSG00000160199, ENSG00000160200, ENSG00000160214, ENSG00000160216, ENSG00000160218, ENSG00000160221, ENSG00000142182, ENSG00000141959, ENSG00000160226, ENSG00000142185, ENSG00000160233, ENSG00000175894, ENSG00000184787, ENSG00000184900, ENSG00000183255, ENSG00000160255, ENSG00000197381, ENSG00000186866, ENSG00000182871,

eachgene

Deatailed information for cohesin site CDBP00420906