- Basic information
- CohesinDB ID: CDBP00420907
- Locus: chr21-44106721-44108797
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Data sourse: GSE206145-GSE177045, GSE104888, ENCSR230ZWH, GSE116868, ENCSR000BLY, ENCSR404BPV, GSE111537, GSE131606, GSE108869, GSE25021, ENCSR917QNE, GSE165895, GSE67783, ENCSR000BKV, GSE86191, GSE206145-NatGen2015, GSE120943, ENCSR198ZYJ, GSE138105, GSE130135, ENCSR338DUC, GSE206145, GSE85526, GSE62063, ENCSR167MTG, GSE110061, GSE111913, GSE155324, ENCSR153HNT, GSE68388, GSE83726, GSE50893, GSE126755, ENCSR000ECS, GSE38411
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Cell type: RH4, GM10847, GM2610, SLK, GM19240, OCI-AML-3, HSPC, Liver, HuCC-T1, RPE, GM2630, Fibroblast, HEKn, GM12890, HeLa-S3, GM2255, BCBL-1, K-562, GM18486, DKO, HFFc6, SNYDER, Monocytes, GM18505, MB157, Lymphoblast, GM12878, GM12891, GM2588, SK-N-SH, GM19239, RT-112, GM19193, GM19099, Ramos, MCF-7, GM12892, HCT-116, HEK293T, Hep-G2, Neurons-H1, GM19238, Neutrophil, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 17% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.511
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
62% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"2_TssAFlnk": 32%,
"1_TssA": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MAX, FLI1, ELF1
- Target gene symbol (double-evidenced CRMs): PWP2,TRAPPC10
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 14
- Number of somatic mutations (non-coding): 16
- Related genes and loops