- Basic information
- CohesinDB ID: CDBP00420914
- Locus: chr21-44134730-44135728
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Data sourse: GSE67783, ENCSR230ZWH, GSE72082, GSE86191, GSE206145-NatGen2015, ENCSR054FKH, ENCSR153HNT, ENCSR917QNE
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Cell type: Fibroblast, HCT-116, Hep-G2, K-562, Liver, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
62% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"2_TssAFlnk": 24%,
"7_Enh": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): PFKL,PWP2,GATD3A,TSPEAR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 28
- Number of somatic mutations (non-coding): 7
- Related genes and loops