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Basic information

CohesinDB ID: CDBP00420921

Locus: chr21-44170128-44171339

Data sourse: ENCSR338DUC, ENCSR230ZWH, GSE67783, GSE72082, GSE86191, GSE98367, GSE111913, GSE206145, GSE206145-NatGen2015, ENCSR000BMY, ENCSR153HNT, GSE120943, GSE68388, GSE131606, GSE50893, ENCSR917QNE

Cell type: MCF-7, Macrophage, RPE, Fibroblast, HCT-116, Monocytes, Hep-G2, GM12878, GM2588, RT-112, K-562, Liver, HSPC, HuCC-T1, DKO

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 5% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.833

Subunit: SA1,Rad21,SA2,SMC1

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: TSS,TES

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: False

Compartment: 62% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "7_Enh": 27%, "5_TxWk": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: .

Target gene symbol (double-evidenced CRMs): GATD3A,TSPEAR,DNMT3L,PFKL

Function elements

Human SNPs: .

Number of somatic mutations (coding): 4

Number of somatic mutations (non-coding): 4

Related genes and loops

Related gene: ENSG00000160221, ENSG00000142182, ENSG00000141959, ENSG00000175894,

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Deatailed information for cohesin site CDBP00420921