- Basic information
- CohesinDB ID: CDBP00420922
- Locus: chr21-44171699-44172159
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Data sourse: GSE206145, GSE206145-NatGen2015, GSE120943, GSE86191
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Cell type: RPE, Fibroblast, HCT-116, Monocytes
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
62% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"7_Enh": 36%,
"5_TxWk": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): GATD3A,PFKL,DNMT3L,TSPEAR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 1
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000160221,
ENSG00000142182,
ENSG00000141959,
ENSG00000175894,
- Related loop:
chr21:44050000-44075000~~chr21:44175000-44200000,
chr21:44075000-44100000~~chr21:44175000-44200000,
chr21:44150000-44175000~~chr21:44250000-44275000,
chr21:44150000-44175000~~chr21:44275000-44300000,
chr21:44150000-44175000~~chr21:44475000-44500000,
chr21:44175000-44200000~~chr21:44275000-44300000,
chr21:44175000-44200000~~chr21:44300000-44325000,
chr21:44175000-44200000~~chr21:44325000-44350000,
chr21:44175000-44200000~~chr21:44700000-44725000,
chr21:5025000-5050000~~chr21:44175000-44200000,
chr21:5050000-5075000~~chr21:44175000-44200000,
chr21:5075000-5100000~~chr21:44150000-44175000,
chr21:5075000-5100000~~chr21:44175000-44200000,
chr21:5100000-5125000~~chr21:44150000-44175000,