- Basic information
- CohesinDB ID: CDBP00420928
- Locus: chr21-44190305-44191390
-
Data sourse: ENCSR000BTQ, ENCSR167MTG, GSE206145-GSE177045, GSE72082, ENCSR000BLY, GSE206145, GSE206145-NatGen2015, ENCSR153HNT, ENCSR000EHX, ENCSR703TNG, GSE25021, GSE165895
-
Cell type: MCF-7, RPE, Fibroblast, Hep-G2, SK-N-SH, K-562, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 10% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: SA1,Rad21,SMC1,SA2,Mau2
-
CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
62% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 31%,
"14_ReprPCWk": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): TRAPPC10,GATD3A,PFKL,CFAP410,TRPM2,TSPEAR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 7
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000160218,
ENSG00000160221,
ENSG00000141959,
ENSG00000160226,
ENSG00000142185,
ENSG00000175894,
- Related loop:
chr21:44050000-44075000~~chr21:44175000-44200000,
chr21:44075000-44100000~~chr21:44175000-44200000,
chr21:44175000-44200000~~chr21:44275000-44300000,
chr21:44175000-44200000~~chr21:44300000-44325000,
chr21:44175000-44200000~~chr21:44325000-44350000,
chr21:44175000-44200000~~chr21:44700000-44725000,
chr21:5025000-5050000~~chr21:44175000-44200000,
chr21:5050000-5075000~~chr21:44175000-44200000,
chr21:5075000-5100000~~chr21:44175000-44200000,