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Basic information

CohesinDB ID: CDBP00420932

Locus: chr21-44199741-44200119

Data sourse: ENCSR000BLD, GSE105028

Cell type: H1-hESC, H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: TES

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 62% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 43%, "5_TxWk": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: POU2F2, BCL6, POU5F1, SS18, SOX2, SIN3A, ZFX, MTA2, ZBTB48, FOXA1, ZBTB33, SMARCC1, YY1, RELA, HDGF, BRG1, RFX1, CHD7, MAX, IKZF1, CDK8, MED1, ZEB1, CREB1, EZH2, ESR1, OCA2, L3MBTL2, T, TCF12, USF1, SP1, SPI1, BHLHE40, IRF1, E2F6, GATAD2B, POU2F3, ASH2L, MXI1, BRD4, TCF3, BCOR, MAZ, TEAD4, ZNF175, NCOR2, MLLT1, PTTG1

Target gene symbol (double-evidenced CRMs): TRPM2,GATD3A,TRAPPC10,TSPEAR,CFAP410,PFKL

Function elements

Human SNPs: .

Number of somatic mutations (coding): 1

Number of somatic mutations (non-coding): 1

Related genes and loops

Related gene: ENSG00000160218, ENSG00000160221, ENSG00000141959, ENSG00000160226, ENSG00000142185, ENSG00000175894,

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Deatailed information for cohesin site CDBP00420932