- Basic information
- CohesinDB ID: CDBP00420934
- Locus: chr21-44206092-44209137
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Data sourse: ENCSR230ZWH, GSE72082, ENCSR000BLY, GSE111537, GSE131606, GSE108869, GSE25021, GSE115602, ENCSR000EFJ, ENCSR917QNE, GSE165895, ENCSR000EAC, ENCSR000DZP, GSE67783, GSE86191, GSE93080, GSE138405, GSE101921, GSE206145-NatGen2015, GSE120943, GSE130135, ENCSR703TNG, GSE94872, GSE98367, ENCSR879KXD, GSE206145, GSE62063, ENCSR000BMY, ENCSR000BTQ, GSE38395, ENCSR000HPG, GSE111913, ENCSR000EDE, ENCSR153HNT, GSE68388, GSE126990, GSE50893, GSE126755, ENCSR000ECS
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Cell type: GM2610, GM19240, OCI-AML-3, HSPC, Liver, HuCC-T1, B-cell, RPE, GM2630, Fibroblast, GM12890, HeLa-S3, hLCL, GM2255, IMR-90, K-562, GM18486, DKO, HFFc6, SNYDER, Monocytes, GM12878, GM12891, GM2588, SK-N-SH, GM19239, RT-112, GM19193, Macrophage, Ramos, MCF-7, GM12892, Hela-Kyoto, HCT-116, HEK293T, HUVEC, HCAEC, GM19238, Neutrophil, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 20% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.556
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
62% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"7_Enh": 38%,
"5_TxWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: Cerebral_amyloid_deposition_(PET_imaging)
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 18
- Related genes and loops