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Basic information

CohesinDB ID: CDBP00420958

Locus: chr21-44251673-44252226

Data sourse: GSE138405, GSE206145-NatGen2015, ENCSR153HNT, GSE86191

Cell type: K-562, Hela-Kyoto, Fibroblast, HCT-116

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.956

Subunit: SA1,Rad21,SA2

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: TSS,TES

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: False

Compartment: 74% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "14_ReprPCWk": 40%, "15_Quies": 25%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: .

Target gene symbol (double-evidenced CRMs): AGPAT3,PCBP3,RRP1B,GATD3A,PDXK,TRAPPC10,CSTB,TSPEAR,DNMT3L,NDUFV3,WDR4,SLC37A1,PKNOX1,ABCG1,ADARB1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 38

Number of somatic mutations (non-coding): 19

Related genes and loops

Related gene: ENSG00000160179, ENSG00000160190, ENSG00000160193, ENSG00000160194, ENSG00000160199, ENSG00000160208, ENSG00000160209, ENSG00000160213, ENSG00000160216, ENSG00000160218, ENSG00000160221, ENSG00000142182, ENSG00000175894, ENSG00000197381, ENSG00000183570,

eachgene

Deatailed information for cohesin site CDBP00420958