- Basic information
- CohesinDB ID: CDBP00420984
- Locus: chr21-44390572-44392392
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Data sourse: ENCSR000BTQ, GSE67783, GSE111537, GSE72082, GSE86191, GSE98367, GSE25021, ENCSR000BLY, GSE105028, GSE120943, ENCSR153HNT, GSE83726, GSE103477, ENCSR703TNG, GSE131606, GSE50893, GSE126755
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Cell type: MCF-7, HCT-116, Monocytes, RH4, SNYDER, THP-1, GM12891, OCI-AML-3, SK-N-SH, K-562, Neutrophil, HSPC, Macrophage, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 7% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.844
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
74% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 33%,
"9_Het": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, TRIM25, FANCL, HMGN3, XBP1, FOXA1, PBX2, LEO1, ATF3, NFIC, CBFB, MECOM, JMJD1C, ELF1, TRIM28, LMO2, ESR1, OCA2, USF2, CTCF, MNT, E2F6, TRIM24, E2F4, RAD51, EED, POU2F2, NANOG, ZNF263, POU5F1, TOP2A, RUNX1T1, MYCN, ZBTB48, STAT1, ERG, OGG1, MYC, RAD21, GRHL3, STAT3, PRDM14, VDR, CEBPB, KMT2A, CREB1, SPI1, ZNF257, INTS13, FLI1, RUNX1, SMC1A, BCL6, CEBPA, SIRT6, ZFX, NFKBIA, RARA, ZBTB2, CDK6, ARNT, NCAPH2, ZNF10, FOS, CDK8, MED1, SCRT2, L3MBTL2, USF1, BCL11A, GSPT2, AATF, SMC3, STAG1, TRP47, CBX3, ZNF17, ZNF600, WT1, CDK9, HOXB13, YY1, RELA, SP140, HIF1A, OTX2, ZNF519, TAL1, MAX, SPIB, ZNF143, CBX2, PLAG1, NCOA3, KDM5B, BHLHE40, AR, RXR, HEXIM1, TFIIIC, HSF1, SCRT1, BRD4, CLOCK, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): PCBP3,TSPEAR,TRPM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 520
- Number of somatic mutations (non-coding): 0
- Related genes and loops