- Basic information
- CohesinDB ID: CDBP00420998
- Locus: chr21-44420223-44421308
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Data sourse: GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
74% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 42%,
"9_Het": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, ZNF195, ZNF621, XBP1, PATZ1, FOXA1, SUZ12, LEO1, ZFHX2, ZBTB7B, ATF3, BMI1, ZBTB5, ZNF444, KLF14, CBFB, TP63, ZNF736, KLF5, ELF1, TRIM28, TEAD1, RBM39, BCLAF1, ESR1, USF2, ZIK1, CTCF, JUN, TCF12, KLF1, E4F1, MNT, DPF2, TRIM24, GLI4, RAD51, ZNF512B, ZNF776, ZNF528, TEAD4, ZNF175, GTF2F1, EHMT2, TFAP2C, EED, GLIS1, YBX1, POU2F2, CHD8, BRD1, ZSCAN5D, MYCN, ZNF263, TOP2A, KDM4C, CTBP1, ZBTB1, ZSCAN21, ZBTB48, ZSCAN5A, STAT1, DUX4, NONO, ZNF488, DDX5, HIC1, ERG2, ERG, OGG1, MYC, RFX1, RAD21, GRHL3, FOXK2, STAT3, ZNF8, PRDM14, ZNF398, DNMT3B, ZNF639, ESRRA, HNRNPL, CREB1, ZNF560, EZH2, KLF8, ZHX2, HES1, SPI1, SSRP1, GATAD2B, MXD3, SMARCA5, HCFC1R1, ATF1, SALL2, RUNX1, BCL6, SMC1A, HDAC1, EZH2phosphoT487, SIRT6, CRY1, ZNF707, ZFX, ZNF658, TET2, ERG3, ZNF473, ZNF513, MYBL2, CREBBP, ZNF384, ZBTB2, ZNF133, TAF15, ZNF169, NRF1, NFIB, NCAPH2, FOS, CDK8, CHD1, TEAD3, KDM6B, ZNF670, ZNF3, KLF9, BCL11A, SP1, ZNF799, REST, ATF7, HNRNPLL, SALL1, AATF, SMC3, STAG1, TRP47, NCOA4, KLF13, PPARG, FOXA2, AGO1, TBL1X, MTA3, ZNF207, ZNF316, ZSCAN16, GTF2B, WT1, ZNF662, ZNF823, CDK9, ZKSCAN1, YY1, RELA, TARDBP, ZNF148, BRG1, ZNF521, MCM3, SP140, ZIC2, HIF1A, ZNF311, NRIP1, ZNF143, GATA1, PLAG1, ZFP69B, NCOA3, ZNF544, NR2F1, ZNF791, ZNF687, PKNOX1, ZNF334, BCL6B, EGR2, AR, HEXIM1, TFIIIC, HSF1, NCOR1, ZBTB26, BRD4, CLOCK, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): TRPM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 20
- Number of somatic mutations (non-coding): 5
- Related genes and loops