- Basic information
- CohesinDB ID: CDBP00421031
- Locus: chr21-44532748-44534071
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Data sourse: ENCSR000BLD, GSE131606, GSE67783, GSE86191, GSE116868, GSE105028, GSE206145-NatGen2015, GSE206145, ENCSR153HNT, GSE106870
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Cell type: RPE, H1-hESC, Fibroblast, HCT-116, MB157, K-562, CVI-hiPSC, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
80% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 50%,
"14_ReprPCWk": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, TRIM25, NME2, FOXA1, RXRB, MLL4, KDM3A, ZBTB7B, HDGF, THAP1, MORC2, PAX5, ZNF320, TEAD1, LMO2, PITX3, HDAC8, ZNF561, ZNF507, E4F1, SOX5, PAX8, ZNF407, DEK, E2F4, ZNF410, ZNF528, KMT2B, GATAD2A, JARID2, NANOG, ZNF263, POU5F1, TOP2A, CTBP1, DUX4, STAT1, ZNF563, SAP130, ERG, NFKB2, ZBTB8A, EZH1, SMARCA4, RFX1, FOXK2, ZNF8, RCOR1, NR2F6, CEBPB, HNRNPL, CREB1, BMPR1A, GABPB1, ZHX2, MIXL1, KLF17, ZNF257, GATA2, ZNF644, MXD3, SIX2, FLI1, DRAP1, MXI1, HCFC1, NR2C2, HCFC1R1, EP400, RUVBL2, RUNX1, CEBPA, HDAC1, NKX2-2, CRY1, IRF3, ZNF658, TET2, ZNF654, ZNF473, SP5, TRIM22, SMARCC1, PRDM10, ZBTB2, ZXDC, TFDP1, ATF2, FOXM1, SP2, SMARCB1, PIAS1, SMAD1, C11orf30, MBD1, STAT5A, GSPT2, IKZF5, ARID2, RBM25, MBD2, ETV4, NFATC3, CBFA2T2, CBX3, ZNF207, CREM, CHD2, NFATC1, SS18, PAF1, ZSCAN16, WT1, MEF2C, MPHOSPH8, CREB3L1, NEUROD1, MCM3, ZFP36, TCF4, ZNF311, BATF, PLAG1, ZFP69B, ZNF544, EGR2, ELF3, RBM14, ARID4B, RXR, EGLN2, ZNF366, ZBTB26, HSF1, NCOR1, SCRT1, ILF3, ZNF316, FOSL1, ZNF660, ZNF621, XBP1, KDM4B, PBX2, HNRNPK, TSC22D4, CDK2, THRB, ATF3, ZC3H8, ZFP64, RUNX3, WDHD1, CBFB, DPF1, TP63, ZSCAN4, MITF, BACH2, ZNF467, MAF, JMJD1C, ELF1, RBM39, SNAI2, KLF10, SMAD5, CTCF, JUN, TAF3, L3MBTL4, MNT, ZBTB20, DPF2, IRF4, ZNF423, MLX, RBPJ, TFAP2C, YBX1, MTA2, ZBTB17, ZBTB48, NONO, UTX, SRF, DDX5, PHB2, TRIP13, ZNF2, HOMEZ, FOXP2, KDM4A, RXRA, NKX3-1, PRDM14, MIER3, HNRNPH1, VDR, NR3C1, ESRRA, STAT5B, CCAR2, TBL1XR1, KLF8, ARHGAP35, GRHL2, EBF3, KDM5A, SSRP1, SMARCA5, NFIL3, CC2D1A, THAP11, CTNNB1, EZH2phosphoT487, LDB1, SOX13, AFF4, POU4F2, SP3, ARNT, NFIB, BACH1, ZNF48, PRDM9, ZEB2, NFYA, HMBOX1, PBX3, NCAPH2, ZNF10, MAFB, HMGXB4, ETV6, TEAD3, DIDO1, ZNF680, U2AF1, KLF9, USF1, SP1, BCL11A, TFAP2A, ZNF479, ATF7, ASH2L, GLIS2, SMC3, STAG1, STAG2, MLLT1, TRP47, AGO1, MTA3, EBF1, MAFF, ZNF580, BCL3, ZKSCAN1, KDM1A, ZNF19, BRG1, ZIC2, PCGF1, GATA3, TAL1, NRIP1, ZNF143, AGO2, MTA1, CBX2, TP53, ZNF334, ZSCAN22, NFKB1, BRD2, PHF5A, KAT8, ARRB1, TBX21, EGR1, RB1, TFIIIC, RNF2, JUND, BRD4, CUX1, ZSCAN23, PGR, CBX5, SOX2, PATZ1, UBTF, TFAP4, SIN3B, BMI1, CHD7, ZNF444, MXD4, ZNF189, KLF6, NFE2L2, ZNF217, ESR1, KLF1, SOX9, E2F6, TRIM24, RFX5, PRKDC, GTF2F1, GLIS1, POU2F2, ZSCAN5D, ZBTB1, ASH1L, ZSCAN5A, ERG2, SP4, TBP, HNF4G, OGG1, ETS1, MYC, GABPA, MCRS1, STAT3, IKZF1, DNMT3B, YBX3, EZH2, ZNF652, PHF8, ZNF436, SPI1, ZNF786, PCBP1, HDAC2, INTS13, GATAD2B, ZNF777, NCOA2, ZNF76, ZNF554, NFYB, ETV5, SALL2, BCL6, SIN3A, ERG3, MYBL2, RARA, NFYC, CREBBP, ZNF35, TAF15, ZNF384, ZNF354B, ZNF169, SMAD4, ZNF518A, CDK8, ZEB1, ZMYM3, GTF3C2, SREBF2, RBM22, MAFK, HNF4A, REST, ARID1A, ZHX1, HNRNPLL, BCOR, FOXP1, AATF, CXXC4, PPARG, TBL1X, ZNF692, ZNF30, ZNF574, ZNF662, TCF7, FOXO3, RELA, TARDBP, SKIL, MGA, MAX, ZNF592, GFI1B, NR2F1, TCF7L2, KDM5B, ZNF791, PKNOX1, MYOD1, PAX3-FOXO1, AR, YAP1, ZNF324, HEXIM1, AHR, DMAP1, FOSL2, HMG20A, HMGN3, MEIS2, SUZ12, RBFOX2, ZFHX2, ZNF90, INSM2, NFIC, CTCFL, ZBTB5, PRDM1, KLF14, ZNF736, CDX2, ZNF629, KLF5, TRIM28, BCLAF1, ETV1, RCOR2, USF2, TCF12, EP300, BAF155, GATA6, SOX6, RAD51, ZNF512B, E2F1, SMC1, TEAD4, FOXA3, ZNF175, EHMT2, EED, CHD8, BRD1, MYCN, RUNX1T1, CDK7, ID3, GATAD1, ARID3A, ASCL1, USP7, ZNF341, RAD21, GRHL3, PROX1, APC, XRCC5, ZNF614, NFE2, TCF25, ZNF639, ZNF667, HES1, TFE3, HBP1, IRF1, SREBF1, ZGPAT, MRTFB, ZIM3, MYF5, ATF1, PTBP1, CBX1, SMC1A, MAFG, SIRT6, FIP1L1, ZNF335, ZFX, ZNF534, SMAD3, PCBP2, IRF2, PRPF4, NOTCH1, RUNX2, CDK6, GATA4, OSR2, ZNF184, NRF1, PBX4, NR2C1, FOS, CHD1, TGIF2, MED1, CEBPD, KDM6B, SCRT2, MYB, ZNF3, L3MBTL2, SETDB1, KLF16, NIPBL, PHF20, ZBTB7A, PHIP, TCF3, SKI, NELFA, ZNF283, KLF13, FOXA2, MIER2, ZNF600, ZBTB33, CDK9, HOXB13, YY1, ZNF148, BRCA1, SP140, HIF1A, BHLHE22, OTX2, ZNF519, ZNF740, TLE3, CEBPG, SP7, NCOA3, ZNF687, NFKBIZ, BHLHE40, TAF1, ZNF579, ZBTB42, MYNN, ZNF248, CLOCK, MAZ, ZNF24
- Target gene symbol (double-evidenced CRMs): COL18A1,TSPEAR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 255
- Number of somatic mutations (non-coding): 0
- Related genes and loops