- Basic information
- CohesinDB ID: CDBP00421032
- Locus: chr21-44534275-44535130
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Data sourse: GSE110061, GSE67783, GSE126755, ENCSR153HNT
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Cell type: K-562, HCT-116, HSPC, Neutrophil
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC3
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
80% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 50%,
"14_ReprPCWk": 32%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, PGR, MAFG, MYCN, POU5F1, WT1, MAFF, MEF2C, HOXB13, KDM1A, ETS1, MYC, AHR, CTCFL, ARNT, ZNF189, MTA1, NFE2, RCOR1, TEAD1, ZNF121, CREB1, ZMYM3, ZNF3, KLF8, C11orf30, CTCF, MAFK, SPI1, KLF1, ZNF146, ILF3, TEAD4, GTF2F1, ZNF316
- Target gene symbol (double-evidenced CRMs): COL18A1,TSPEAR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 9
- Number of somatic mutations (non-coding): 3
- Related genes and loops