- Basic information
- CohesinDB ID: CDBP00421035
- Locus: chr21-44547626-44548710
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE67783, GSE86191, ENCSR153HNT, GSE126755
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Cell type: MCF-7, H1-hESC, HCT-116, K-562, Neutrophil, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: Mau2,SA1,Rad21,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
80% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 24%,
"7_Enh": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SOX2, FOXA1, SUZ12, ZFHX2, ZBTB7B, CHD7, TP63, MAF, ELF1, TRIM28, ESR1, OCA2, TP73, CTCF, RYBP, E2F6, ZNF410, ZNF528, TEAD4, POU2F2, CHD8, ZSCAN5D, MYCN, POU5F1, TOP2A, ZNF317, ZBTB48, STAT1, SRF, BAHD1, ERG2, TBP, ERG, OGG1, MYC, SMARCA4, RAD21, GABPA, STAT3, DNMT3B, NR3C1, EZH2, BMPR1A, SPI1, ZIM3, RUNX1, CEBPA, EZH2phosphoT487, SIRT6, ZFX, SMAD3, ERG3, ETV6, CHD1, SETDB1, USF1, ASH2L, TCF3, BCOR, ZNF394, TRP47, CBFA2T2, FOXA2, CBX3, WT1, HOXB13, KDM1A, RELA, ZIC2, GATA3, MAX, GATA1, TLE3, NR2F1, TP53, ZNF334, ELF3, BRD2, AR, RXR, EGLN2, ZBTB42, HSF1, BRD4, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): COL18A1,TSPEAR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 2
- Related genes and loops