- Basic information
- CohesinDB ID: CDBP00421038
- Locus: chr21-44555314-44555880
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Data sourse: ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
80% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 50%,
"15_Quies": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRIM25, FOSL1, SOX2, XBP1, SUZ12, RING1B, THRB, ATF3, CHD7, ZNF320, ZNF736, ELF1, LMO2, ESR1, CTCF, TCF12, RYBP, E2F6, TEAD4, PDX1, TFAP2C, CHD8, ZNF263, MYCN, POU5F1, ZBTB48, DUX4, STAT1, SP4, ERG, MYC, RAD21, GRHL3, PRDM14, CEBPB, CREB1, EZH2, GRHL2, HDAC2, PTBP1, RUNX1, CEBPA, EZH2phosphoT487, SOX13, ZFX, TET2, CBX8, ERG3, ZBTB2, ARNT, SMAD4, CHD1, CDK8, MED1, TEAD3, ZEB1, ZNF264, SETDB1, USF1, POU2F3, AATF, SMC3, NCOR2, STAG1, TRP47, FOXA2, WT1, HOXB13, YY1, RELA, MCM3, SP140, ZIC2, HIF1A, ZFP36, MAF1, MAX, TAL1, CBX2, NR2F1, ZNF334, BHLHE40, AR, EGR1, HEXIM1, ZBTB26, HSF1, RNF2, BRD4, SCRT1, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): TSPEAR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 15
- Number of somatic mutations (non-coding): 5
- Related genes and loops