- Basic information
- CohesinDB ID: CDBP00421040
- Locus: chr21-44567750-44570549
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Data sourse: GSE131606, GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116, HSPC, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES,Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
80% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 45%,
"14_ReprPCWk": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: XBP1, KDM4B, FOXA1, RBFOX2, PBX2, ATF3, ZNF736, ELF1, TRIM28, ESR1, OCA2, CTCF, JUN, MNT, LMO1, E2F6, E2F1, POU2F2, MYCN, ZNF263, TOP2A, POU5F1, KDM4C, CTBP1, ZBTB48, ZSCAN5A, ZNF300, ERG, ASCL1, OGG1, MYC, SMARCA4, GRHL3, GABPA, STAT3, XRCC5, APC, PRDM14, RCOR1, DNMT3B, NR3C1, CREB1, ZBTB11, EZH2, GABPB1, SPI1, FLI1, ZIM3, ATF1, RUNX1, MAFG, BCL6, CBX1, SIN3A, ZFX, TET2, PRDM10, CREBBP, ARNT, NRF1, SOX11, CHD1, GMEB1, DIDO1, MYB, ZNF3, L3MBTL2, SETDB1, USF1, BCL11A, POU2F3, ATF7, HNRNPLL, AATF, SMC3, NCOR2, STAG1, TRP47, ZNF316, FOXA2, MTA3, CREM, CBX3, WT1, MEF2C, CDK9, HOXB13, KDM1A, YY1, RELA, ZNF148, SP140, HIF1A, SKIL, MGA, MAX, GATA1, ZNF143, PLAG1, CBX2, NR2F1, BRD2, BHLHE40, AR, ZBTB40, EGR1, HEXIM1, HSF1, RNF2, BRD4, JUND, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): TSPEAR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 288
- Number of somatic mutations (non-coding): 14
- Related genes and loops