- Basic information
- CohesinDB ID: CDBP00421042
- Locus: chr21-44576197-44576477
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
80% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 44%,
"9_Het": 31%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, HMG20A, FOXA1, RBFOX2, RXRB, PBX2, KDM3A, TFAP4, ATF3, NFIC, THRB, ZFP64, MXD4, MECOM, TEAD1, ELF1, KLF6, RCOR2, ESR1, CTCF, TCF12, EP300, SOX5, DMAP1, FOXA3, GATAD2A, PDX1, RBPJ, MLX, TFAP2C, CHD8, MYCN, ZNF263, POU5F1, ID3, ZNF317, ZBTB48, ZSCAN5A, NONO, SRF, GATAD1, SAP130, GMEB2, HNF4G, ETS1, MYC, HOMEZ, RAD21, GRHL3, RXRA, GABPA, STAT3, XRCC5, ZNF614, PRDM14, MIER3, DNMT3B, NR2F6, NR3C1, CEBPB, HNRNPL, CREB1, CCAR2, TBL1XR1, EZH2, ZNF652, GABPB1, ZHX2, TFE3, MIXL1, HDAC2, GATA2, ZNF644, MXD3, SIX2, DRAP1, ZGPAT, MXI1, NFIL3, ETV5, PTBP1, RUNX1, THAP11, SMC1A, BCL6, CEBPA, CBX1, EZH2phosphoT487, SOX13, ZFX, SIN3A, FIP1L1, TET2, ERG3, SP5, SMARCC1, RARA, NFYC, ZNF48, SMAD4, HMGXB4, MED1, TEAD3, ZMYM3, ZNF3, KLF9, USF1, SP1, HNF4A, IKZF5, REST, ZBTB7A, ASH2L, HNRNPLL, FOXP1, SMC3, STAG1, SKI, PPARG, FOXA2, AGO1, RBBP5, SS18, MIER2, WT1, ZNF580, ZKSCAN1, HOXB13, KDM1A, YY1, RELA, BRG1, MCM3, SP140, GATA3, MAX, ZNF143, CEBPG, TP53, PKNOX1, ZNF334, ELF3, PHF5A, KAT8, ARID4B, AR, NFKBIZ, BHLHE40, ZBTB26, HSF1, BRD4, CUX1, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): ADARB1,PCBP3,TSPEAR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 12
- Number of somatic mutations (non-coding): 3
- Related genes and loops