- Basic information
- CohesinDB ID: CDBP00421049
- Locus: chr21-44600529-44603570
-
Data sourse: ENCSR000BLD, ENCSR000BTU, GSE118494, GSE126990, GSE131606, GSE67783, GSE86191, GSE138405, GSE110061, GSE116868, GSE111913, GSE25021, GSE206145, GSE206145-NatGen2015, ENCSR000ECE, ENCSR153HNT, GSE68388, GSE111537, GSE106870, GSE38411
-
Cell type: MCF-7, H1-hESC, RPE, Fibroblast, HCT-116, Hela-Kyoto, MB157, CVB-hiPSC, Ishikawa, RT-112, IMR-90, K-562, BCBL-1, OCI-AML-3, HSPC, HuCC-T1, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 7% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.811
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
80% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"14_ReprPCWk": 41%,
"15_Quies": 37%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: NANOG, POU2F2, PGR, FOXA2, POU5F1, MYCN, TOP2A, SOX2, ZFX, ZNF263, ZSCAN5D, SS18, ZBTB48, WT1, STAT1, FOXA1, CBX8, HOXB13, SMARCC1, ERG, TFAP4, RELA, BRG1, CHD7, RAD21, SP140, MECOM, MAX, TP63, XRCC5, MIER3, PLAG1, TEAD3, TRIM28, EZH2, TP53, OCA2, TP73, ZNF136, SETDB1, CTCF, BCL11A, BAF155, PAX3-FOXO1, AR, TAF1, GATA2, E2F6, HSF1, RNF2, ASH2L, BRD4, ZBTB26, ZNF490, FOXP1, MAZ, ZNF440, TEAD4, ZNF24, STAG1
- Target gene symbol (double-evidenced CRMs): TSPEAR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 1567
- Number of somatic mutations (non-coding): 23
- Related genes and loops