- Basic information
- CohesinDB ID: CDBP00421057
- Locus: chr21-44643720-44644157
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Data sourse: GSE206145-GSE177045, GSE67783, GSE86191
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Cell type: MCF-7, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
80% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"9_Het": 59%,
"15_Quies": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CBX1, CBX3, POU5F1, CTBP1, ZNF317, XBP1, ZNF30, FOXA1, HOXB13, ERG, KDM1A, RELA, ZNF90, AHR, MYC, ZNF830, ARNT, HIF1A, GRHL3, GABPA, STAT3, TAL1, TRIM28, CREB1, PIAS1, ESR1, SETDB1, CTCF, ZNF577, BAF155, TRIM24, ASH2L, BRD4, ZNF490, FOXP1, TFAP2C
- Target gene symbol (double-evidenced CRMs): PCBP3,TSPEAR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 15
- Number of somatic mutations (non-coding): 5
- Related genes and loops