- Basic information
- CohesinDB ID: CDBP00421076
- Locus: chr21-44686092-44689539
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Data sourse: ENCSR000BLD, ENCSR167MTG, GSE131606, GSE206145-GSE177045, GSE67783, GSE72082, GSE86191, GSE25021, ENCSR000BLS, GSE105028, GSE206145-NatGen2015, ENCSR000ECE, ENCSR054FKH, GSE206145, GSE83726, GSE106870, GSE50893, GSE145327, GSE97394
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Cell type: MCF-7, H1-hESC, RPE, Fibroblast, HCT-116, RH4, Hep-G2, GM2610, CVB-hiPSC, HUES64, H9-hESC, CVI-hiPSC, HSPC, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 6% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.844
- Subunit: Mau2,SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
80% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 41%,
"13_ReprPC": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, TRIM25, SOX2, XBP1, FOXA1, SUZ12, ATF3, RUNX3, CHD7, CBFB, MECOM, PAX5, TP63, TEAD1, BCLAF1, TRIM28, RBM39, ELF1, ESR1, OCA2, USF2, CTCF, TCF12, EP300, POU2F1, GATA6, DPF2, SOX4, E2F6, E2F4, TEAD4, PDX1, TFAP2C, EED, GLIS1, JARID2, NANOG, CHD8, ZNF425, BRD1, MYCN, POU5F1, RUNX1T1, ZNF263, ZBTB48, ZSCAN5A, ERG, ASCL1, OGG1, MYC, EZH1, SMARCA4, EOMES, FOXP2, RAD21, GRHL3, NKX2-1, GABPA, STAT3, PRDM14, IKZF1, VDR, NR3C1, STAT5B, CREB1, EZH2, GRHL2, SPI1, HDAC2, GATA2, GATAD2B, SIX2, FLI1, RELB, NCOA2, MYF5, RUNX1, SIRT6, EZH2phosphoT487, SIN3A, ZFX, ZNF335, POU4F2, SMAD3, TET2, SMARCC1, RARA, TAF15, SMAD2, ARNT, BACH1, PRDM9, SMAD4, NCAPH2, CHD1, FOS, MED1, TEAD3, MYB, SMAD1, MAFK, BCL11A, POU2F3, PCGF2, TCF3, BCOR, FOXP1, AATF, SMC3, STAG1, PAX7, TRP47, CBFA2T2, MEF2B, ZNF207, TBL1X, EBF1, WT1, KDM1A, YY1, RELA, TARDBP, JUNB, BRG1, SP140, ZIC2, HIF1A, GATA3, BATF, TAL1, MAX, ZNF143, NCOA3, NR2F2, NEUROG2, NR2F1, TP53, PKNOX1, MYOD1, T, ARRB1, AR, TAF1, RXR, HEXIM1, TFIIIC, ZBTB26, HSF1, BRD4, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): DNMT3L,HSF2BP,TSPEAR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 51
- Number of somatic mutations (non-coding): 17
- Related genes and loops