- Basic information
- CohesinDB ID: CDBP00421092
- Locus: chr21-44731456-44731919
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Data sourse: GSE86191, ENCSR153HNT, GSE83726
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Cell type: K-562, RH4, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
80% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 34%,
"15_Quies": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MBD3, NFIA, FOSL1, PGR, HMG20A, SOX2, XBP1, FOXA1, SUZ12, RXRB, PBX2, ZNF28, ZFHX2, KDM3A, TFAP4, ZNF529, TSC22D4, ATF3, NFIC, THRB, ZFP64, THAP1, ZNF112, CHD7, ZNF444, CBFB, MXD4, SMARCE1, TP63, MITF, ZNF320, ZNF736, HDAC3, JMJD1C, ZNF586, TEAD1, TRIM28, ELF1, ETV1, ZNF26, LMO2, ESR1, MLL, ZNF217, RCOR2, USF2, CTCF, JUN, TCF12, EP300, BAF155, KLF1, SOX5, GATA6, DPF2, SOX4, E2F6, RFX5, ZNF518A, NR5A2, ZNF528, ZNF350, ZNF280A, FOXA3, ZNF175, ZNF92, GTF2F1, GATAD2A, TFAP2C, RBPJ, MLX, GLIS1, POU2F2, NANOG, BRD1, MYCN, POU5F1, ZNF263, ZNF778, TOP2A, CTBP1, ID3, ZBTB17, ZBTB48, DUX4, ZSCAN5A, RUNX1T1, SRF, GATAD1, SAP130, NBN, ERG2, HNF4G, ERG, HOXC5, PBX1, ASCL1, OGG1, ETS1, MYC, SMARCA4, HOMEZ, RAD21, GRHL3, RXRA, NKX2-1, PROX1, GABPA, STAT3, XRCC5, ZNF614, NKX3-1, PRDM14, IKZF1, RCOR1, DNMT3B, NR2F6, NFE2, VDR, MIER3, NR3C1, ESRRA, CEBPB, ZNF667, HNRNPL, CREB1, CCAR2, EZH2, KLF8, GRHL2, ZNF652, GABPB1, SPI1, TFE3, MIXL1, ZNF257, PCBP1, HDAC2, GATA2, ZNF644, GATAD2B, MXD3, FLI1, DRAP1, ZGPAT, ZNF789, MXI1, HHEX, ZNF490, HCFC1R1, NFIL3, NCOA2, ZIM3, ZNF554, MYF5, ETV5, PTBP1, RUNX1, THAP11, BCL6, ZBTB24, HDAC1, CEBPA, SIRT6, CBX1, SIN3A, ZFX, ZNF534, SOX13, AFF4, SMAD3, TET2, ERG3, SP5, TWIST1, PRDM10, SMARCC1, ZNF549, RARA, ZNF384, CREBBP, ZXDC, TAF15, ZNF169, NOTCH1, GATA4, GR, ZNF184, ARNT, NRF1, DAXX, NFIB, ATF2, ZNF48, ZEB2, HMBOX1, SMAD4, CBFA2T3, NCAPH2, PBX3, FOS, CDK8, CHD1, SMARCB1, HMGXB4, MED1, TEAD3, KDM6B, MYB, SCRT2, PIAS1, ZNF680, SETDB1, SREBF2, TBX5, ZNF22, USF1, BCL11A, TFAP2A, NIPBL, HNF4A, SP1, IKZF5, ZBTB7A, ASH2L, HNRNPLL, CTBP2, AFF1, TCF3, MBD2, FOXP1, AATF, SMC3, ELL2, STAG1, NFATC3, SKI, TRP47, CBFA2T2, KLF13, PPARG, FOXA2, AGO1, CREM, CHD2, SS18, MIER2, ZSCAN16, GTF2B, WT1, MAFF, ZNF662, MEF2C, HOXB13, ZNF580, FOXO3, KDM1A, YY1, RELA, KLF7, TARDBP, MPHOSPH8, NEUROD1, BRG1, ZNF510, ZNF610, SP140, ZFP36, HIF1A, OTX2, GATA3, ZNF311, TAL1, MAX, NRIP1, GATA1, ZNF143, MTA1, PLAG1, TLE3, CEBPG, NCOA3, NR2F2, ZNF544, NR2F1, NEUROG2, KDM5B, TP53, PKNOX1, ZNF687, ZNF547, ZNF334, MYOD1, EGR2, ELF3, PHF5A, KAT8, ZFP28, BHLHE40, AR, ARID4B, NFKBIZ, ZNF324, EGR1, HEXIM1, TFIIIC, HSF1, ZBTB26, NCOR1, BRD4, JUND, SCRT1, ZNF280D, CUX1, MAZ, ZNF248, ZNF24, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): PFKL,TRAPPC10,TRPM2,CFAP410,TSPEAR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000160218,
ENSG00000141959,
ENSG00000160226,
ENSG00000142185,
ENSG00000175894,
- Related loop:
chr21:43350000-43375000~~chr21:44725000-44750000,
chr21:44075000-44100000~~chr21:44725000-44750000,
chr21:44325000-44350000~~chr21:44725000-44750000,
chr21:44350000-44375000~~chr21:44725000-44750000,
chr21:44375000-44400000~~chr21:44725000-44750000,
chr21:44475000-44500000~~chr21:44725000-44750000,
chr21:44500000-44525000~~chr21:44725000-44750000,
chr21:44525000-44550000~~chr21:44725000-44750000,
chr21:44575000-44600000~~chr21:44725000-44750000,
chr21:44625000-44650000~~chr21:44725000-44750000,