- Basic information
- CohesinDB ID: CDBP00421108
- Locus: chr21-44786700-44787596
-
Data sourse: GSE67783, ENCSR153HNT
-
Cell type: K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 58%,
"4_Tx": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: NFIA, PGR, NME2, FOXA1, LEO1, ATF3, ZFP64, ZBTB44, ZNF189, TP63, HDAC3, ZNF467, CDX2, MYOG, TEAD1, ESR1, CTCF, TCF12, BAF155, EP300, ZBTB20, E2F1, GLIS1, NANOG, CHD8, POU2F2, MYCN, TOP2A, ZBTB48, ERG, HOXC5, ZNF585B, ASCL1, MYC, ONECUT1, EZH1, GRHL3, RXRA, NKX2-1, GABPA, STAT3, NKX3-1, VDR, NR3C1, CEBPB, CREB1, FEZF1, ZNF257, HDAC2, GATA2, FLI1, ZNF554, RUNX1, ZFX, PCBP2, TET2, PRDM10, CREBBP, RUNX2, GATA4, OSR2, PBX4, DAXX, ARNT, SUPT5H, MED1, ZXDB, PIAS1, ZNF3, KLF16, RBM22, BCL11A, TFAP2A, GSPT2, HNF4A, ARID1A, ZSCAN31, ASH2L, FOXP1, PRDM6, AATF, SMC3, STAG1, MLLT1, NFATC3, TRP47, CBFA2T2, ZNF283, FOXA2, TBL1X, AGO1, PAF1, WT1, HOXB13, ZNF19, RELA, YY1, NEUROD1, SP140, ZIC2, HIF1A, OTX2, GATA3, ZNF143, AGO2, TLE3, SP7, NCOA3, TCF7L2, TP53, NFKB1, ZNF843, AR, ZBTB42, ZBTB26, BRD4, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): FAM207A,TSPEAR,CFAP410,TRAPPC10,ITGB2-AS1,HSF2BP,ADARB1,ITGB2,PTTG1IP,TRPM2,PFKL,RRP1B,UBE2G2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 8
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000160207,
ENSG00000160208,
ENSG00000160218,
ENSG00000141959,
ENSG00000160226,
ENSG00000142185,
ENSG00000175894,
ENSG00000184787,
ENSG00000183255,
ENSG00000160255,
ENSG00000227039,
ENSG00000160256,
ENSG00000197381,
- Related loop:
chr21:27500000-27525000~~chr21:44775000-44800000,
chr21:43350000-43375000~~chr21:44775000-44800000,
chr21:43650000-43675000~~chr21:44775000-44800000,
chr21:44075000-44100000~~chr21:44775000-44800000,
chr21:44325000-44350000~~chr21:44775000-44800000,
chr21:44337712-44340224~~chr21:44792463-44794394,
chr21:44350000-44375000~~chr21:44775000-44800000,
chr21:44475000-44500000~~chr21:44775000-44800000,
chr21:44500000-44525000~~chr21:44775000-44800000,
chr21:44505181-44506574~~chr21:44792488-44794438,
chr21:44509121-44511913~~chr21:44792385-44794491,
chr21:44509188-44511574~~chr21:44792239-44794440,
chr21:44509189-44512062~~chr21:44792150-44794532,
chr21:44509195-44511716~~chr21:44792591-44794447,
chr21:44509197-44511724~~chr21:44792559-44794303,
chr21:44509207-44511848~~chr21:44792389-44794429,
chr21:44509213-44512100~~chr21:44792156-44794493,
chr21:44509225-44511899~~chr21:44792192-44794515,
chr21:44509235-44511954~~chr21:44792155-44794858,
chr21:44509236-44511997~~chr21:44792073-44794483,
chr21:44509239-44511525~~chr21:44792488-44794374,
chr21:44509242-44511652~~chr21:44792257-44794053,
chr21:44509243-44511788~~chr21:44792303-44794463,
chr21:44509258-44511514~~chr21:44792553-44794330,
chr21:44509266-44512046~~chr21:44792219-44794436,
chr21:44509273-44511642~~chr21:44792534-44794311,
chr21:44509284-44511597~~chr21:44792564-44794485,
chr21:44509310-44511786~~chr21:44792445-44794502,
chr21:44509377-44511681~~chr21:44792242-44794455,
chr21:44509457-44512145~~chr21:44792168-44794432,
chr21:44509481-44512016~~chr21:44792235-44794464,
chr21:44509488-44511948~~chr21:44792109-44794449,
chr21:44509542-44511909~~chr21:44792296-44794494,
chr21:44509599-44512047~~chr21:44792203-44794435,
chr21:44509689-44512016~~chr21:44792155-44794487,
chr21:44509692-44511946~~chr21:44792297-44794482,
chr21:44509704-44511783~~chr21:44792291-44794265,
chr21:44509706-44511793~~chr21:44792098-44794805,
chr21:44509743-44512037~~chr21:44792110-44794473,
chr21:44509871-44511501~~chr21:44792580-44794252,
chr21:44509876-44511623~~chr21:44792577-44794368,
chr21:44509897-44511527~~chr21:44792516-44794254,
chr21:44510020-44511606~~chr21:44792567-44794217,
chr21:44618046-44619706~~chr21:44792109-44794449,
chr21:44618096-44619578~~chr21:44792564-44794485,
chr21:44707178-44708406~~chr21:44792109-44794449,
chr21:44754736-44756602~~chr21:44792156-44794493,
chr21:44775000-44800000~~chr21:44875000-44900000,
chr21:44775000-44800000~~chr21:44900000-44925000,
chr21:44775000-44800000~~chr21:44925000-44950000,
chr21:44775000-44800000~~chr21:45125000-45150000,
chr21:5100000-5125000~~chr21:44775000-44800000,