Browse_each

Basic information

CohesinDB ID: CDBP00421119

Locus: chr21-44823998-44825617

Data sourse: GSE67783, GSE86191, GSE116868, GSE111913, GSE206145, GSE206145-NatGen2015, ENCSR153HNT, GSE131606, GSE38411

Cell type: RPE, Fibroblast, HCT-116, MB157, RT-112, K-562, BCBL-1, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 2% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.911

Subunit: SA1,Rad21,SA2,SMC1

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 81% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 55%, "9_Het": 38%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: ETV1, SETDB1, ERG

Target gene symbol (double-evidenced CRMs): NDUFV3,PFKL,TRPM2,TRAPPC10,ITGB2,WDR4,ADARB1,ITGB2-AS1,CFAP410,COL18A1,FAM207A,PKNOX1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 17

Related genes and loops

Related gene: ENSG00000160193, ENSG00000160194, ENSG00000160199, ENSG00000160218, ENSG00000141959, ENSG00000160226, ENSG00000142185, ENSG00000160255, ENSG00000227039, ENSG00000160256, ENSG00000197381, ENSG00000182871,

eachgene

Deatailed information for cohesin site CDBP00421119