Browse_each

Basic information

CohesinDB ID: CDBP00421120

Locus: chr21-44827372-44827683

Data sourse: ENCSR703TNG, GSE67783, ENCSR153HNT

Cell type: K-562, MCF-7, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: SA1,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 81% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "9_Het": 56%, "15_Quies": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: CBX5, NME2, XBP1, FOXA1, ZNF529, ZNF362, PRDM1, ZNF444, PAX5, MITF, ZNF320, JMJD1C, ELF1, TRIM28, BCLAF1, ESR1, OCA2, ZFP91, JUN, CTCF, E4F1, KLF1, DPF2, TRIM24, IRF4, ZNF528, ZNF280A, TEAD4, ZNF92, EHMT2, EED, POU2F2, XRCC3, POU5F1, RUNX1T1, TOP2A, MTA2, ZBTB17, DUX4, ZSCAN5A, ZSCAN21, ZNF317, STAT1, NBN, ERG, MIER1, MYC, GRHL3, FOXK2, GABPA, IKZF1, RCOR1, LEF1, NR2F6, ZNF639, NR3C1, ESRRA, CEBPB, KMT2A, CCAR2, EZH2, SPI1, HDAC2, ZNF490, RELB, NFYB, ZNF554, ATF1, RUNX1, CBX1, LDB1, ZFX, ZNF534, CREBBP, ZBTB2, NOTCH1, ZNF133, ZNF384, ZNF184, ARNT, ATF2, ZEB2, CBFA2T3, FOXM1, CDK8, ZNF558, ZNF680, ZMYM3, PIAS1, ZNF331, ZNF3, NCOA1, L3MBTL2, SETDB1, ZNF22, USF1, ZBTB7A, RBM25, ATF7, BCOR, SMC3, ILK, MLLT1, STAG1, MEF2B, CBX3, EBF1, GTF2B, WT1, ZNF30, ESR2, ZBTB33, MEF2C, HOXB13, KDM1A, TARDBP, AHR, ZNF510, SKIL, OTX2, ZNF143, PLAG1, ZFP69B, SP7, NCOA3, NR2F2, NR2F1, TP53, PKNOX1, ZSCAN22, TBX21, AR, ZNF324, EGR1, ZNF280D, NCOR1, BRD4, ZNF24, ZNF316

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 2

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00421120