- Basic information
- CohesinDB ID: CDBP00421123
- Locus: chr21-44834121-44835964
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Data sourse: ENCSR000BLD, GSE72082, ENCSR000BLY, GSE105028, GSE131606, GSE108869, GSE25021, ENCSR000BUC, ENCSR000BTU, ENCSR000EAC, GSE143937, GSE67783, ENCSR000BKV, GSE86191, GSE138405, GSE76893, GSE206145-NatGen2015, ENCSR703TNG, GSE106870, GSE116344, ENCSR000EEG, ENCSR338DUC, ENCSR879KXD, ENCSR000BLS, GSE206145, ENCSR000EHX, ENCSR000BTQ, ENCSR167MTG, GSE129526, GSE111913, ENCSR054FKH, ENCSR000EDE, ENCSR153HNT, GSE68388, GSE83726, GSE126990, GSE50893
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Cell type: RH4, CVB-hiPSC, HuCC-T1, H9-hESC, RPE, Fibroblast, Ishikawa, HeLa-S3, GM2255, K-562, GM18486, DKO, H1-hESC, GM12878, GM12891, SK-N-SH, GM19239, RT-112, MCF-7, GM12892, Hela-Kyoto, HCT-116, Hep-G2, A-549, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 16% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.722
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 48%,
"14_ReprPCWk": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, HMGN3, XBP1, KDM4B, FOXA1, SUZ12, PBX2, UBTF, MLL4, ATF3, SMARCE1, TP63, ZNF629, ELF1, KLF6, ETV1, NFE2L2, ESR1, HDAC8, JUN, CTCF, EP300, KLF1, GATA6, DPF2, PAX8, E2F6, TRIM24, E2F4, E2F1, ZNF528, TEAD4, RBPJ, MYCN, ZNF263, ID3, CTBP1, MTA2, ZBTB17, ZBTB48, STAT1, SAP130, TBP, ZBTB21, SMARCC2, ETS1, MYC, SMARCA4, ARID1B, FOXP2, RAD21, GRHL3, PROX1, GABPA, XRCC5, PRDM14, IKZF1, RCOR1, DNMT3B, LEF1, CEBPB, SRSF3, ESRRA, CREB1, ZBTB11, TBL1XR1, KLF8, GRHL2, GABPB1, ZHX2, SPI1, HES1, IRF1, PCBP1, HDAC2, GATA2, SREBF1, HCFC1, SMARCA5, ATF1, ETV5, RUNX1, CTNNB1, MAFG, CBX1, HDAC1, SMC1A, ZFX, TET2, ZMIZ1, ZBTB2, IRF2, BRD9, RUNX2, GATA4, NRF1, ELK1, ATF2, ZNF48, ZEB2, CBFA2T3, ETV6, FOS, CDK8, HMGXB4, TEAD3, ZEB1, SMAD1, ZNF3, L3MBTL2, KLF16, MAFK, BCL11A, ARID2, REST, ZBTB7A, ATF7, HNRNPLL, AFF1, BCOR, AATF, SMC3, STAG1, MLLT1, TRP47, CBFA2T2, PPARG, ZNF316, MTA3, CREM, RBBP5, CBX3, ZNF600, MIER2, WT1, CDK9, ZKSCAN1, YY1, RELA, TARDBP, NEUROD1, JUNB, SP140, ZIC2, SKIL, ZFP36, TAL1, MAX, ZNF143, MTA1, KLF4, GFI1B, NR2F2, NR2F1, KDM5B, TP53, PKNOX1, ELF3, BHLHE40, AR, ARID4B, TAF1, ZBTB40, RXR, HEXIM1, RB1, EGR1, ZBTB26, HSF1, RNF2, JUND, BRD4, ILF3, MYNN, NCOR1, MAZ, CUX1, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 13
- Related genes and loops