- Basic information
- CohesinDB ID: CDBP00421124
- Locus: chr21-44836322-44840030
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE72082, ENCSR000FAD, GSE116868, GSE105028, GSE131606, GSE25021, GSE115602, ENCSR000BTU, GSE143937, GSE67783, ENCSR000BKV, GSE86191, GSE76893, GSE206145-NatGen2015, GSE130135, ENCSR703TNG, GSE116344, GSE118494, ENCSR338DUC, ENCSR000BLS, GSE206145, ENCSR000EHX, ENCSR000BTQ, ENCSR167MTG, GSE110061, GSE111913, ENCSR054FKH, ENCSR153HNT, GSE68388, GSE83726, GSE38411
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Cell type: RH4, HuCC-T1, H9-hESC, RPE, Fibroblast, Ishikawa, IMR-90, K-562, BCBL-1, DKO, H1-hESC, MB157, SK-N-SH, RT-112, MCF-7, HCT-116, HEK293T, Hep-G2, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 15% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.789
- Subunit: SA1,Rad21,SMC1,SA2,Mau2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 28%,
"14_ReprPCWk": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MBD3, FOXO1, FOSL1, PGR, TRIM25, XBP1, PATZ1, FOXA1, KDM4B, SUZ12, RBFOX2, PBX2, RXRB, MLL4, ZFHX2, UBTF, TFAP4, ZBTB7B, KDM3A, HDGF, HNRNPK, ZNF28, THRB, ATF3, NFIC, ZFP64, THAP1, CTCFL, CHD7, ZNF444, CBFB, MXD4, ZNF189, DPF1, SMARCE1, TP63, TCF12, MITF, ZNF320, ZNF467, KLF5, TEAD1, ZNF121, TRIM28, KLF6, RBM39, ELF1, ZNF217, ESR1, HDAC8, USF2, JUN, ZNF577, CTCF, EP300, KLF1, E4F1, MNT, BAF155, SOX5, ZBTB20, DPF2, E2F6, DMAP1, TRIM24, RFX5, SOX6, E2F4, RAD51, PRKDC, ZNF423, ZNF512B, ZNF528, TEAD4, KMT2B, GTF2F1, GATAD2A, RBPJ, TFAP2C, PDX1, GLIS1, POU2F2, CHD8, ZNF263, MYCN, RUNX1T1, ID3, POU5F1, CTBP1, TOP2A, ZBTB17, ZBTB48, ZSCAN5A, STAT1, DUX4, GATAD1, SAP130, ERG2, SP4, TBP, HNF4G, ERG, ASCL1, OGG1, ZNF341, ETS1, MYC, SMARCA4, RFX1, RAD21, GRHL3, RXRA, NKX2-1, GABPA, STAT3, ZNF614, XRCC5, NKX3-1, PRDM14, IKZF1, RCOR1, LEF1, NR2F6, MIER3, TEAD2, DNMT3B, NFE2, ESRRA, CEBPB, NR3C1, ZNF750, HNRNPL, KMT2A, CREB1, TBL1XR1, KLF8, GRHL2, GABPB1, PHF8, ZHX2, SPI1, TFE3, MIXL1, KLF17, PCBP1, HDAC2, GATA2, INTS13, GATAD2B, MXD3, SREBF1, FLI1, HCFC1, ZGPAT, NFIL3, MYF5, ATF1, ETV5, PTBP1, RUNX1, THAP11, BCL6, CBX1, CEBPA, NKX2-2, HDAC1, SIRT6, SOX13, ZFX, SIN3A, SMC1A, CRY1, SMAD3, FIP1L1, TET2, ERG3, SP5, SMARCC1, TWIST1, CREBBP, RARA, ZXDC, ZNF35, TAF15, RUNX2, ARNT, NRF1, TFDP1, SOX11, ZNF48, SMAD4, CBFA2T3, NCAPH2, CHD1, CDK8, FOS, MED1, TEAD3, DIDO1, KDM6B, MYB, PIAS1, HNRNPH1, ZNF3, NCOA1, L3MBTL2, SETDB1, SREBF2, USF1, BCL11A, HNF4A, FOXA2, IKZF5, REST, ZBTB7A, ATF7, ASH2L, HNRNPLL, AFF1, THRA, TCF3, MBD2, GLIS2, AATF, SMC3, STAG1, MLLT1, SKI, TRP47, CBFA2T2, PPARG, CBX3, MTA3, CREM, RBBP5, TBL1X, CHD2, ZNF600, ZNF692, AGO1, WT1, ESR2, ZNF574, ZBTB33, CDK9, ZNF580, ZKSCAN1, KDM1A, YY1, RELA, TARDBP, JUNB, NEUROD1, BRG1, MCM3, SP140, ZIC2, HIF1A, ZFP36, TCF4, BHLHE22, GATA3, MGA, TAL1, MAX, NRIP1, ZNF143, GATA1, PLAG1, ZFP69B, ZNF592, SP7, GFI1B, NR2F2, NCOA3, KLF4, ZNF281, NR2F1, NEUROG2, KDM5B, TERF2, ZNF687, PKNOX1, ZBTB6, TP53, ZNF334, MYOD1, EGR2, BRD2, ARID4B, BHLHE40, AR, TAF1, ZNF579, ZBTB40, RXR, ZNF324, EGLN2, ZBTB42, EGR1, HEXIM1, TFIIIC, ZBTB26, NCOR1, RNF2, BRD4, JUND, ILF3, HSF1, MAZ, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): UBE2G2,SUMO3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 21
- Related genes and loops