- Basic information
- CohesinDB ID: CDBP00421126
- Locus: chr21-44842094-44850066
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Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, GSE115602, GSE93080, GSE67783, GSE86191, GSE101921, ENCSR806UKK, GSE120943, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, GSE118494, ENCSR000EEG, ENCSR338DUC, ENCSR247LSH, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE83726, GSE126755, ENCSR748MVX, ENCSR000ECS, GSE38411, ENCSR000BLD, GSE104888, GSE126634, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, GSE97394, ENCSR217ELF, GSE131956, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, ENCSR481YWD, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, ENCSR981FDC, ENCSR807WAC, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR153HNT, GSE68388, GSE126990
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Cell type: MDM, RH4, GM10847, GM2610, CVB-hiPSC, GM19240, OCI-AML-3, HSPC, Liver, HuCC-T1, B-cell, H9-hESC, GM2630, RPE, Fibroblast, Ishikawa, GM12890, HeLa-S3, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, HFFc6, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, MB157, Lymphoblast, GM12878, GM12891, GM2588, GBM39, SK-N-SH, GM19239, HeLa-Tet-On, GM19193, RT-112, HAP1, GM19099, HUES64, Macrophage, MCF-7, THP-1, Hela-Kyoto, HCT-116, HEK293T, Hep-G2, A-549, HUVEC, HCAEC, GM19238, Neutrophil, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 62% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.356
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES,Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
81% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"7_Enh": 22%,
"5_TxWk": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, TRIM25, NME2, FOXA1, RXRB, MLL4, KDM3A, ZBTB7B, HDGF, THAP1, MORC2, PAX5, TEAD1, ZNF121, LMO2, OCA2, PITX3, HDAC8, ZNF561, SOX5, PYGO2, E2F4, DEK, ZNF528, KMT2B, GATAD2A, JARID2, NANOG, ZNF263, POU5F1, CTBP1, ZMYND11, DUX4, STAT1, SAP130, ERG, EZH1, SMARCA4, TOP1, FOXK2, RCOR1, NR2F6, CEBPB, HNRNPL, CREB1, EPAS1, GABPB1, ZHX2, MIXL1, ZNF257, KLF17, GATA2, ZNF644, MXD3, FLI1, HCFC1, DRAP1, MXI1, RELB, HCFC1R1, EP400, RUVBL2, RUNX1, CEBPA, HDAC1, NKX2-2, TET2, TBX3, SP5, TRIM22, SMARCC1, PRDM10, ZNF549, ZBTB2, ZXDC, ATF2, SP2, SMARCB1, PML, SMAD1, NR1H2, EVI1, IKZF5, ARID2, ELL2, ETV4, NFATC3, CBFA2T2, CBX3, CREM, CHD2, PAF1, NFATC1, WT1, MEF2C, CREB3L1, NEUROD1, JUNB, ZFP36, SPIB, PLAG1, KLF4, BCL11B, MED, EGR2, ELF3, RBM14, ARID4B, RXR, EGLN2, ZBTB26, HSF1, NCOR1, SCRT1, ILF3, FOSL1, ZNF660, XBP1, PBX2, SRSF4, ATF3, THRB, ZFP64, CBFB, TP63, ZNF467, JMJD1C, MAF, INTS11, ELF1, RBM39, SNAI2, KLF10, JUN, CTCF, MNT, ZBTB20, DPF2, IRF4, ZNF423, RBPJ, TFAP2C, MLX, ZSCAN21, ZBTB17, ZBTB48, MTA2, NONO, SRF, DDX5, NBN, ZNF626, KDM4A, HOMEZ, RXRA, PRDM14, TEAD2, HNRNPH1, TERF2, MIER3, VDR, NR3C1, ESRRA, STAT5B, KMT2A, KLF8, GRHL2, EBF3, SSRP1, SMARCA5, NFIL3, THAP11, SOX13, AFF4, POU4F2, ZNF18, SP3, ARNT, ZNF48, NFYA, PBX3, NCAPH2, HMGXB4, TEAD3, TAF7, KLF9, USF1, BCL11A, SP1, ZNF479, ATF7, ASH2L, CTBP2, GLIS2, SMC3, STAG1, MLLT1, STAG2, ZNF394, TRP47, AGO1, MTA3, EBF1, MAFF, ZNF580, ZKSCAN1, BCL3, KDM1A, BRG1, ZIC2, PCGF1, GATA3, KLF15, TAL1, NRIP1, ZNF143, AGO2, TP53, ZNF334, PHF5A, BRD2, KAT8, TBX21, EGR1, RB1, TFIIIC, RNF2, JUND, BRD4, CUX1, IRF9, TBX2, PGR, PATZ1, LEO1, UBTF, TFAP4, CHD7, ZNF444, MXD4, ZNF189, SMARCE1, KLF6, NFE2L2, ZNF217, ESR1, KLF1, ZNF714, SOX4, E2F6, TRIM24, RFX5, PRKDC, ZNF92, GTF2F1, GLIS1, POU2F2, ZSCAN5D, ZNF778, KDM4C, ZSCAN5A, ERG2, SP4, TBP, HNF4G, HOXC5, OGG1, ETS1, MYC, ARID1B, KLF12, MCRS1, GABPA, STAT3, IKZF1, DNMT3B, INO80, EZH2, ZNF652, PHF8, ZNF436, SPI1, PCBP1, HDAC2, INTS13, NCOA2, ZNF554, ETV5, BCL6, SIN3A, ZNF16, ERG3, MYBL2, RARA, ZNF35, NFYC, CREBBP, TAF15, SMAD4, CBFA2T3, CDK8, ZEB1, SUPT16H, NCOA1, GTF3C2, SREBF2, RBM22, NR4A1, HNF4A, REST, ZHX1, HNRNPLL, BCOR, FOXP1, AATF, PTTG1, CXXC4, PPARG, TBL1X, GTF2B, ZNF30, FOXO3, RELA, TARDBP, SKIL, MGA, MAX, ZNF592, GFI1B, NEUROG2, TCF7L2, KDM5B, NR2F1, PKNOX1, T, AR, ZBTB16, ZNF324, HEXIM1, DMAP1, AHR, FOSL2, HMG20A, HMGN3, SUZ12, RBFOX2, ZFHX2, NFIC, CTCFL, MECOM, CDX2, KLF5, TRIM28, BCLAF1, ETV1, RCOR2, USF2, TCF12, EP300, BAF155, GATA6, CREB3, SOX6, E2F1, SMC1, TEAD4, FOXA3, ZNF175, EED, ZNF425, CHD8, BRD1, MYCN, RUNX1T1, ID3, HINFP, MLLT3, GATAD1, ASCL1, ZNF341, RAD21, GRHL3, PROX1, APC, XRCC5, ZNF614, NFE2, ZNF285, TFE3, EHF, HBP1, IRF1, SREBF1, ZGPAT, ATF1, PTBP1, CBX1, SMC1A, SIRT6, ZNF335, ZFX, FIP1L1, SMAD3, TWIST1, IRF2, PRPF4, RUNX2, GATA4, NRF1, NR2C1, FOS, CHD1, SUPT5H, TGIF2, MED1, KDM6B, MYB, CEBPD, SCRT2, ZNF3, L3MBTL2, SETDB1, KLF16, NIPBL, ZBTB7A, CCNT2, PHIP, TCF3, SKI, KLF13, FOXA2, RBBP5, E2F8, MIER2, ZNF600, ZBTB33, CDK9, HOXB13, YY1, ZNF148, SP140, HIF1A, GATA1, HAND2, CEBPG, SP7, NR2F2, ZNF687, NFKBIZ, BHLHE40, PTRF, TAF1, ZNF579, ZBTB40, MYNN, CLOCK, MAZ, MEF2D, ZNF24
- Target gene symbol (double-evidenced CRMs): CFAP410,TRPM2,ITGB2,SUMO3,TRAPPC10,PTTG1IP,PFKL,UBE2G2,ITGB2-AS1,FAM207A,ADARB1
- Function elements
- Human SNPs: Red_cell_distribution_width
- Number of somatic mutations (coding): 15
- Number of somatic mutations (non-coding): 46
- Related genes and loops
- Related gene:
ENSG00000160218,
ENSG00000141959,
ENSG00000160226,
ENSG00000142185,
ENSG00000184787,
ENSG00000184900,
ENSG00000183255,
ENSG00000160255,
ENSG00000227039,
ENSG00000160256,
ENSG00000197381,
- Related loop:
chr21:27500000-27525000~~chr21:44825000-44850000,
chr21:44050000-44075000~~chr21:44850000-44875000,
chr21:44075000-44100000~~chr21:44850000-44875000,
chr21:44325000-44350000~~chr21:44850000-44875000,
chr21:44799411-44802024~~chr21:44845318-44847256,
chr21:44799435-44802625~~chr21:44836063-44837863,
chr21:44799651-44802591~~chr21:44845216-44847176,
chr21:44799726-44802540~~chr21:44845295-44847056,
chr21:44816840-44819191~~chr21:44845055-44847370,
chr21:44817582-44819008~~chr21:44845213-44846787,
chr21:44845305-44846867~~chr21:44873085-44874364,
chr21:44845305-44846867~~chr21:44882190-44883389,
chr21:44845323-44847405~~chr21:44871275-44872729,
chr21:44845331-44847295~~chr21:44932164-44933556,
chr21:44850000-44875000~~chr21:44950000-44975000,
chr21:44850000-44875000~~chr21:45125000-45150000,
chr21:44850000-44875000~~chr21:45325000-45350000,
chr21:44850000-44875000~~chr21:46050000-46075000,