- Basic information
- CohesinDB ID: CDBP00421147
- Locus: chr21-45036977-45037577
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Data sourse: GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
85% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"9_Het": 50%,
"15_Quies": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CBX5, CBX3, ZSCAN5D, CEBPA, MEIS2, ZFX, GTF2B, ZBTB48, PBX2, KDM1A, ZNF19, RELA, ARNT, PRDM9, GABPA, ZEB2, STAT3, PRDM14, RCOR1, TRIM28, ZNF680, PIAS1, STAG1, ZNF3, KLF8, ZNF41, SETDB1, ZNF577, CTCF, TFE3, HNF4A, HDAC2, TRIM24, MAZ, ZNF280A, ZIM3, ZNF554, MLLT1
- Target gene symbol (double-evidenced CRMs): PCBP3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops