- Basic information
- CohesinDB ID: CDBP00421155
- Locus: chr21-45047846-45048148
-
Data sourse: GSE206145-NatGen2015, GSE206145-GSE177045, GSE67783
-
Cell type: MCF-7, Fibroblast, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,SA1,SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
85% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 31%,
"9_Het": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RUNX1, CBX5, PGR, CBX3, CEBPA, ZFX, ZNF600, ZNF317, HLF, ZNF134, CBX8, ZNF18, ERG, RELA, ZNF384, JUNB, ATF3, NFIC, MYC, RUNX2, RUNX3, SP140, MAX, ZNF10, MED1, CBX2, CEBPG, CEBPB, NR3C1, TEAD1, TRIM28, CEBPD, NR2F2, SETDB1, ZNF577, CTCF, SPI1, TRIM24, RNF2, BRD4, ZNF440
- Target gene symbol (double-evidenced CRMs): PCBP3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops