- Basic information
- CohesinDB ID: CDBP00421181
- Locus: chr21-45100319-45101486
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Data sourse: GSE67783, GSE86191, GSE111913, GSE206145, GSE206145-NatGen2015, GSE120943, ENCSR153HNT, GSE38411
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Cell type: RPE, Fibroblast, HCT-116, Monocytes, RT-112, K-562, BCBL-1, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.911
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
85% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 50%,
"15_Quies": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, TRP47, FOSL1, TRIM25, SMC1A, FOXA2, MYCN, POU5F1, RUNX1T1, SIRT6, ZFX, ZNF263, XBP1, KDM4C, ZBTB48, SIN3A, WT1, TET2, ERG3, DDX5, RBFOX2, ERG2, LEO1, CDK9, PBX2, ZNF57, YY1, RELA, ERG, OGG1, ATF3, MYC, CDK6, ETS1, CTCFL, SP140, GRHL3, CBFB, STAT3, MAF1, NCAPH2, TP63, PRDM14, AGO2, CHD1, SMARCB1, TAL1, NR3C1, ELF1, KDM6B, TRIM28, SCRT2, RBM39, KDM5B, CHD8, ESR1, MYOD1, CTCF, ZHX2, SPI1, AR, SSRP1, RXR, TRIM24, HEXIM1, TFIIIC, HSF1, FLI1, HNRNPLL, SCRT1, BRD4, MBD2, MAZ, AATF, HCFC1R1, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): TRAPPC10,FAM207A,ADARB1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 24
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000160218,
ENSG00000160256,
ENSG00000197381,
- Related loop:
chr21:43350000-43375000~~chr21:45075000-45100000,
chr21:44075000-44100000~~chr21:45075000-45100000,
chr21:44075000-44100000~~chr21:45100000-45125000,
chr21:44950000-44975000~~chr21:45075000-45100000,
chr21:44950000-44975000~~chr21:45100000-45125000,
chr21:45000000-45025000~~chr21:45100000-45125000,
chr21:45075000-45100000~~chr21:45200000-45225000,
chr21:45098049-45099896~~chr21:45127459-45129775,
chr21:45098054-45099897~~chr21:45127466-45129726,
chr21:45098176-45099841~~chr21:45127847-45129707,
chr21:45098199-45099847~~chr21:45127871-45130307,
chr21:45098212-45099854~~chr21:45127500-45129746,
chr21:45098216-45099888~~chr21:45127480-45129775,
chr21:45098336-45099838~~chr21:45127832-45130027,
chr21:45098340-45099748~~chr21:45127945-45129475,
chr21:45098340-45099756~~chr21:45127809-45130230,
chr21:45098352-45099841~~chr21:45136497-45137989,
chr21:45098367-45099786~~chr21:45127883-45129461,
chr21:45098370-45099878~~chr21:45127837-45129997,
chr21:45098378-45099734~~chr21:45129555-45131317,
chr21:45098380-45099783~~chr21:45127879-45129458,
chr21:45100000-45125000~~chr21:45200000-45225000,
chr21:45101917-45103625~~chr21:45127837-45129997,
chr21:45102083-45103514~~chr21:45127466-45129726,
chr21:5100000-5125000~~chr21:45100000-45125000,