- Basic information
- CohesinDB ID: CDBP00421185
- Locus: chr21-45107832-45108500
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Data sourse: GSE206145-NatGen2015, GSE62063
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Cell type: Fibroblast, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: NIPBL,SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
85% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 62%,
"15_Quies": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CBX3, ZNF84, TRIM24, EZH2phosphoT487, AFF1, ZNF92
- Target gene symbol (double-evidenced CRMs): ADARB1,TRAPPC10,FAM207A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 12
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000160218,
ENSG00000160256,
ENSG00000197381,
- Related loop:
chr21:44075000-44100000~~chr21:45100000-45125000,
chr21:44950000-44975000~~chr21:45100000-45125000,
chr21:45000000-45025000~~chr21:45100000-45125000,
chr21:45100000-45125000~~chr21:45200000-45225000,
chr21:45101917-45103625~~chr21:45127837-45129997,
chr21:45102083-45103514~~chr21:45127466-45129726,
chr21:5100000-5125000~~chr21:45100000-45125000,