- Basic information
- CohesinDB ID: CDBP00421188
- Locus: chr21-45113415-45114548
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Data sourse: GSE98367, ENCSR000BMY, ENCSR153HNT, GSE83726, GSE120943, GSE73207
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Cell type: RH4, Monocytes, TF-1, GM12878, K-562, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SMC3,SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
85% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 40%,
"15_Quies": 25%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, NME2, MEIS2, XBP1, FOXA1, HLF, PBX2, LEO1, ZFHX2, LYL1, THAP1, CBFB, MECOM, TP63, JMJD1C, ZNF506, MAF, TEAD1, TRIM28, SNAI2, LMO2, CTCF, TCF12, EP300, MNT, DPF2, PAX8, SOX4, SOX6, TEAD4, PDX1, TFAP2C, MYCN, ZNF263, RUNX1T1, ID3, POU5F1, CTBP1, ZBTB48, DUX4, STAT1, ERG, MYC, ARID1B, RAD21, RCOR1, NR2F6, ESRRA, CEBPB, KMT2A, CREB1, SPI1, GATA2, RUNX1, MAFG, HDAC1, EZH2phosphoT487, CEBPA, ZFX, SMAD3, GATA4, PBX4, ATF2, CBFA2T3, PBX3, CDK8, MED1, CEBPD, MYB, ZNF680, SMAD1, ZNF3, C11orf30, TBX5, EVI1, RBM22, BCL11A, REST, ATF7, TCF3, FOXP1, SMC3, NCOR2, STAG1, TRP47, CBFA2T2, ZNF600, WT1, MEF2C, HOXB13, BCL3, YY1, SP140, HIF1A, OTX2, GATA3, TAL1, GATA1, ZNF143, HAND2, CEBPG, NCOA3, NR2F2, ZNF334, MYOD1, EGR2, AR, ZBTB26, SCRT1, JUND, BRD4, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): ADARB1,FAM207A,TRAPPC10
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 39
- Number of somatic mutations (non-coding): 0
- Related genes and loops