- Basic information
- CohesinDB ID: CDBP00421191
- Locus: chr21-45124436-45132048
-
Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, GSE115602, GSE139435, GSE93080, GSE67783, GSE86191, GSE36578, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, GSE118494, ENCSR000EEG, ENCSR338DUC, GSE130140, GSE115248, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE83726, GSE126755, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE38411, GSE104888, GSE126634, GSE132649, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE38395, GSE131956, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, ENCSR481YWD, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, ENCSR404BPV, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE155828, ENCSR981FDC, ENCSR807WAC, GSE62063, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR153HNT, GSE68388, GSE126990
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Cell type: GM2610, CUTLL1, B-cell, Fibroblast, GM12890, BCBL-1, HFFc6, SNYDER, GM18505, MB157, GM12878, SK-N-SH, GM19193, Ramos, MCF-7, Hela-Kyoto, HEK293T, HCAEC, OCI-AML-3, GM10847, SLK, GP5d, GM2630, HEKn, hLCL, IMR-90, GM18486, DKO, H1-hESC, Monocytes, CNCCs-H9ESC, HeLa-Tet-On, THP-1, HUES64, HeLa, BGO3, TC-71, Neutrophil, CVB-hiPSC, CVI-hiPSC, Liver, TC-32, H9-hESC, HeLa-S3, GM2255, GM18526, Lymphoblast, GM12891, GM2588, GBM39, GM19239, RT-112, Macrophage, GM12892, HCT-116, MCF-10A, Hep-G2, Neurons-H1, HUVEC, HSPC, HAP1, MDM, RH4, GM19240, Transformed-RPE1, HuCC-T1, RPE, HMEC, Ishikawa, Kelly, K-562, Leukemia-SEM, GM19099, T-47D, HL-60, A-549, GM19238, CNCC-WT33iPSC, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 84% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.100
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
-
CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
85% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 33%,
"7_Enh": 32%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOXO1, NFIA, NME2, FOXA1, RXRB, KDM3A, HDGF, THAP1, ZBTB44, IKZF3, PAX5, TEAD1, ZNF121, LMO2, OCA2, PITX3, ZNF561, E4F1, SOX5, DEK, ZNF528, KMT2B, GATAD2A, ZNF263, POU5F1, TOP2A, ERF, ZMYND11, DUX4, STAT1, SAP130, ERG, ZBTB21, ZBTB8A, EZH1, SMARCA4, RCOR1, NR2F6, CEBPB, HNRNPL, CREB1, BMPR1A, GABPB1, ZHX2, MIXL1, KLF17, GATA2, MXD3, SIX2, FLI1, DRAP1, MXI1, HCFC1, RELB, RUNX1, CEBPA, NKX2-2, CRY1, TET2, ZNF654, SP5, TRIM22, SMARCC1, PRDM10, ZBTB2, ATF2, SMARCB1, PIAS1, SMAD1, C11orf30, IKZF5, ELL2, NFATC3, CBFA2T2, MEF2B, ZNF207, CREM, CHD2, ZSCAN16, WT1, MEF2C, NEUROD1, JUNB, TCF4, BATF, KLF4, ZFP69B, EGR2, ELF3, ARID4B, RXR, EGLN2, ZNF366, ZBTB26, HSF1, SCRT1, ZNF316, FOSL1, SMARCA2, ZNF660, XBP1, PBX2, ATF3, ZC3H8, THRB, ZFP64, RUNX3, CBFB, ZSCAN4, MITF, ZNF467, JMJD1C, MAF, ELF1, SNAI2, KLF10, CTCF, JUN, LMO1, ZBTB20, MNT, DPF2, IRF4, ZNF280A, PDX1, RBPJ, MLX, TFAP2C, MTA2, ZBTB17, ZBTB48, ZNF317, SRF, DDX5, NBN, ZNF2, HOMEZ, RXRA, NKX3-1, PRDM14, MIER3, HNRNPH1, VDR, NR3C1, KMT2A, KLF8, EBF3, SMARCA5, NFIL3, THAP11, ZBTB24, EZH2phosphoT487, SOX13, AFF4, ZNF770, ZNF18, ARNT, DAXX, ZNF48, ZEB2, HMBOX1, PBX3, MAFB, ZNF10, HMGXB4, TEAD3, KLF9, TBX5, USF1, BCL11A, TFAP2A, SP1, NKX2-5, ZNF479, ATF7, ASH2L, PRDM6, SMC3, STAG1, MLLT1, STAG2, TRP47, AGO1, EBF1, MAFF, ZNF580, KDM1A, BRG1, ISL1, ZIC2, GATA3, TAL1, NRIP1, ZNF143, CBX2, TP53, ZNF334, NFKB1, PHOX2B, BRD2, PHF5A, KAT8, TBX21, EGR1, RB1, IKZF2, BRD4, JUND, TBX2, PGR, SOX2, PATZ1, LEO1, UBTF, TFAP4, ZNF444, MXD4, ZNF189, SMARCE1, KLF6, NFE2L2, ESR1, KLF1, SOX4, RFX5, GTF2F1, GLIS1, POU2F2, ZSCAN5D, ZNF778, KDM4C, ERG2, SP4, TBP, HOXC5, OGG1, ETS1, MYC, ARID1B, NKX2-1, GABPA, STAT3, IKZF1, DNMT3B, SRSF3, EZH2, ZNF652, SPI1, HDAC2, ZNF554, ETV5, BCL6, SIN3A, ERG3, MEF2A, CREBBP, ZNF35, ZNF384, RARA, NFYC, SMAD4, ZNF518A, CBFA2T3, CDK8, ZEB1, RBM22, MAFK, HNF4A, REST, ARID1A, ZHX1, HNRNPLL, BCOR, FOXP1, AATF, NCOR2, PPARG, TBL1X, ZNF692, ZNF574, ZNF823, TCF7, RELA, TARDBP, SKIL, MAX, NR2F1, KDM5B, PKNOX1, MYOD1, T, ZNF12, AR, ZNF324, HEXIM1, DMAP1, AHR, FOSL2, HMG20A, ZFHX2, NFIC, CTCFL, PRDM1, GLYR1, CDX2, ZNF629, KLF5, TRIM28, BCLAF1, RCOR2, USF2, TCF12, BAF155, EP300, E2F1, SMC1, TEAD4, FOXA3, EED, CHD8, BRD1, MYCN, CDK7, ID3, GATAD1, ARID3A, USP7, ASCL1, ZNF341, RAD21, GRHL3, ZNF614, XRCC5, NFE2, ZNF639, JMJD6, FEZF1, TFE3, IRF1, SREBF1, ZGPAT, ZNF284, MRTFB, MAFG, SMC1A, CBX1, ZNF335, ZFX, SMAD3, TWIST1, NOTCH1, RUNX2, GATA4, OSR2, ZNF184, PBX4, NRF1, FOS, CHD1, MED1, KDM6B, MYB, SCRT2, CEBPD, ZNF3, PHIP, TCF3, PAX7, SKI, FOXA2, E2F8, ZNF600, MIER2, ZBTB33, CDK9, HOXB13, YY1, SP140, HIF1A, OTX2, BHLHE22, GATA1, HAND2, TLE3, CEBPG, SP7, NCOA3, NR2F2, BHLHE40, NFKBIZ, ZNF579, ZBTB42, MYNN, MAZ
- Target gene symbol (double-evidenced CRMs): PTTG1IP,TRPM2,PCBP3,COL6A2,FAM207A,ADARB1,ITGB2-AS1,COL18A1,SLC19A1,CFAP410,PFKL,DNMT3L,TSPEAR,SUMO3,TRAPPC10,UBE2G2,POFUT2,ITGB2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 111
- Number of somatic mutations (non-coding): 31
- Related genes and loops
- Related gene:
ENSG00000160218,
ENSG00000142182,
ENSG00000141959,
ENSG00000160226,
ENSG00000142185,
ENSG00000175894,
ENSG00000184787,
ENSG00000184900,
ENSG00000183255,
ENSG00000160255,
ENSG00000227039,
ENSG00000160256,
ENSG00000197381,
ENSG00000186866,
ENSG00000182871,
ENSG00000173638,
ENSG00000183570,
ENSG00000142173,
- Related loop:
chr21:41425000-41450000~~chr21:45125000-45150000,
chr21:44075000-44100000~~chr21:45100000-45125000,
chr21:44075000-44100000~~chr21:45125000-45150000,
chr21:44250000-44275000~~chr21:45125000-45150000,
chr21:44325000-44350000~~chr21:45125000-45150000,
chr21:44350000-44375000~~chr21:45125000-45150000,
chr21:44475000-44500000~~chr21:45125000-45150000,
chr21:44500000-44525000~~chr21:45125000-45150000,
chr21:44509258-44511514~~chr21:45136441-45138077,
chr21:44575000-44600000~~chr21:45125000-45150000,
chr21:44775000-44800000~~chr21:45125000-45150000,
chr21:44800000-44825000~~chr21:45125000-45150000,
chr21:44850000-44875000~~chr21:45125000-45150000,
chr21:44875000-44900000~~chr21:45125000-45150000,
chr21:44925000-44950000~~chr21:45125000-45150000,
chr21:44946673-44947938~~chr21:45127808-45129737,
chr21:44948396-44951228~~chr21:45127428-45130286,
chr21:44948396-44951228~~chr21:45136536-45138234,
chr21:44948527-44950730~~chr21:45127507-45129698,
chr21:44948527-44950730~~chr21:45136541-45138119,
chr21:44948539-44951249~~chr21:45127847-45129707,
chr21:44948562-44951220~~chr21:45127912-45129676,
chr21:44948562-44951220~~chr21:45136498-45138268,
chr21:44948698-44951270~~chr21:45127524-45130258,
chr21:44948698-44951270~~chr21:45136501-45138215,
chr21:44948700-44950631~~chr21:45127849-45129698,
chr21:44948727-44951221~~chr21:45136469-45139375,
chr21:44948731-44951049~~chr21:45127805-45130063,
chr21:44948733-44950723~~chr21:45127850-45129763,
chr21:44948743-44951274~~chr21:45136451-45139374,
chr21:44948752-44951150~~chr21:45127809-45130230,
chr21:44948752-44951150~~chr21:45136612-45139341,
chr21:44948766-44950656~~chr21:45127629-45129847,
chr21:44948766-44950656~~chr21:45136554-45138213,
chr21:44948770-44950717~~chr21:45127870-45130316,
chr21:44948770-44950717~~chr21:45136548-45138031,
chr21:44948779-44951284~~chr21:45127832-45130027,
chr21:44948779-44951284~~chr21:45136502-45139352,
chr21:44948787-44950611~~chr21:45127704-45130101,
chr21:44948787-44951112~~chr21:45127846-45129697,
chr21:44948787-44951112~~chr21:45136436-45139361,
chr21:44948791-44951263~~chr21:45127819-45130264,
chr21:44948791-44951263~~chr21:45136550-45139365,
chr21:44948793-44950744~~chr21:45127871-45130307,
chr21:44948793-44950744~~chr21:45136509-45138178,
chr21:44948794-44951165~~chr21:45127459-45129775,
chr21:44948794-44951165~~chr21:45136439-45139361,
chr21:44948796-44951186~~chr21:45127884-45129649,
chr21:44948796-44951186~~chr21:45136521-45139366,
chr21:44948803-44950656~~chr21:45127827-45130309,
chr21:44948803-44950656~~chr21:45136575-45138049,
chr21:44948820-44951094~~chr21:45127808-45129737,
chr21:44948820-44951094~~chr21:45136445-45139357,
chr21:44948829-44950724~~chr21:45127849-45129741,
chr21:44948848-44951218~~chr21:45127807-45130392,
chr21:44948848-44951218~~chr21:45136459-45138096,
chr21:44948850-44951149~~chr21:45127879-45129713,
chr21:44948850-44951149~~chr21:45136526-45138224,
chr21:44948854-44950700~~chr21:45127904-45130105,
chr21:44948854-44950700~~chr21:45136689-45138114,
chr21:44948864-44951198~~chr21:45127863-45130143,
chr21:44948864-44951198~~chr21:45136453-45139353,
chr21:44948870-44950696~~chr21:45127901-45129571,
chr21:44948870-44950696~~chr21:45136553-45138016,
chr21:44948871-44951185~~chr21:45127466-45129726,
chr21:44948871-44951185~~chr21:45136470-45138237,
chr21:44948880-44951179~~chr21:45127837-45129997,
chr21:44948880-44951179~~chr21:45136471-45139356,
chr21:44948885-44951228~~chr21:45127863-45130232,
chr21:44948890-44951305~~chr21:45127500-45129746,
chr21:44948890-44951305~~chr21:45136450-45139355,
chr21:44948914-44951002~~chr21:45127480-45129775,
chr21:44948914-44951002~~chr21:45136550-45139351,
chr21:44948977-44950672~~chr21:45136564-45138054,
chr21:44948978-44951177~~chr21:45127867-45129720,
chr21:44948995-44950623~~chr21:45127704-45129669,
chr21:44949003-44950763~~chr21:45127859-45129704,
chr21:44949003-44950763~~chr21:45136551-45139385,
chr21:44949037-44950790~~chr21:45127879-45129458,
chr21:44949051-44950706~~chr21:45127908-45129655,
chr21:44949051-44950706~~chr21:45136497-45137989,
chr21:44949058-44950795~~chr21:45127982-45129449,
chr21:44949086-44950830~~chr21:45127945-45129475,
chr21:44949086-44950830~~chr21:45136441-45138077,
chr21:44949088-44950833~~chr21:45136218-45138062,
chr21:44949105-44950823~~chr21:45127883-45129461,
chr21:44949105-44950823~~chr21:45136391-45137996,
chr21:44949108-44950845~~chr21:45127928-45129446,
chr21:44949108-44950845~~chr21:45136553-45137918,
chr21:44949119-44951195~~chr21:45127782-45129672,
chr21:44949149-44950890~~chr21:45127914-45129475,
chr21:44949149-44950890~~chr21:45129555-45131317,
chr21:44949149-44950890~~chr21:45136373-45139344,
chr21:44949151-44950685~~chr21:45127888-45129651,
chr21:44949151-44950685~~chr21:45136540-45139040,
chr21:44949182-44950677~~chr21:45127891-45129697,
chr21:44949182-44950677~~chr21:45136649-45138012,
chr21:44949215-44950847~~chr21:45127943-45129454,
chr21:44949215-44950847~~chr21:45136480-45138022,
chr21:44949240-44950847~~chr21:45136576-45138071,
chr21:44949268-44950685~~chr21:45136592-45137879,
chr21:44950000-44975000~~chr21:45100000-45125000,
chr21:44950000-44975000~~chr21:45125000-45150000,
chr21:44961753-44963484~~chr21:45127832-45130027,
chr21:44975000-45000000~~chr21:45125000-45150000,
chr21:45000000-45025000~~chr21:45100000-45125000,
chr21:45000000-45025000~~chr21:45125000-45150000,
chr21:45044990-45046200~~chr21:45127480-45129775,
chr21:45073104-45076272~~chr21:45127837-45129997,
chr21:45098049-45099896~~chr21:45127459-45129775,
chr21:45098054-45099897~~chr21:45127466-45129726,
chr21:45098176-45099841~~chr21:45127847-45129707,
chr21:45098199-45099847~~chr21:45127871-45130307,
chr21:45098212-45099854~~chr21:45127500-45129746,
chr21:45098216-45099888~~chr21:45127480-45129775,
chr21:45098336-45099838~~chr21:45127832-45130027,
chr21:45098340-45099748~~chr21:45127945-45129475,
chr21:45098340-45099756~~chr21:45127809-45130230,
chr21:45098352-45099841~~chr21:45136497-45137989,
chr21:45098367-45099786~~chr21:45127883-45129461,
chr21:45098370-45099878~~chr21:45127837-45129997,
chr21:45098378-45099734~~chr21:45129555-45131317,
chr21:45098380-45099783~~chr21:45127879-45129458,
chr21:45100000-45125000~~chr21:45200000-45225000,
chr21:45101917-45103625~~chr21:45127837-45129997,
chr21:45102083-45103514~~chr21:45127466-45129726,
chr21:45125000-45150000~~chr21:45225000-45250000,
chr21:45125000-45150000~~chr21:45250000-45275000,
chr21:45125000-45150000~~chr21:45275000-45300000,
chr21:45125000-45150000~~chr21:45300000-45325000,
chr21:45125000-45150000~~chr21:45325000-45350000,
chr21:45125000-45150000~~chr21:45425000-45450000,
chr21:45125000-45150000~~chr21:45450000-45475000,
chr21:45125000-45150000~~chr21:45500000-45525000,
chr21:45125000-45150000~~chr21:45525000-45550000,
chr21:45125000-45150000~~chr21:45550000-45575000,
chr21:45125000-45150000~~chr21:45575000-45600000,
chr21:45125000-45150000~~chr21:45750000-45775000,
chr21:45125000-45150000~~chr21:45800000-45825000,
chr21:45125000-45150000~~chr21:45825000-45850000,
chr21:45125000-45150000~~chr21:45875000-45900000,
chr21:45125000-45150000~~chr21:45900000-45925000,
chr21:45125000-45150000~~chr21:46100000-46125000,
chr21:45136439-45139361~~chr21:45438127-45440654,
chr21:45136450-45139355~~chr21:45818438-45821813,
chr21:45136469-45139375~~chr21:45817787-45821574,
chr21:5100000-5125000~~chr21:45100000-45125000,