- Basic information
- CohesinDB ID: CDBP00421196
- Locus: chr21-45150033-45150257
-
Data sourse: GSE67783, ENCSR153HNT
-
Cell type: K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
85% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 66%,
"15_Quies": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): POFUT2,ADARB1,PCBP3,COL18A1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000197381,
ENSG00000186866,
ENSG00000182871,
ENSG00000183570,
- Related loop:
chr21:41425000-41450000~~chr21:45125000-45150000,
chr21:44075000-44100000~~chr21:45125000-45150000,
chr21:44250000-44275000~~chr21:45125000-45150000,
chr21:44325000-44350000~~chr21:45125000-45150000,
chr21:44350000-44375000~~chr21:45125000-45150000,
chr21:44475000-44500000~~chr21:45125000-45150000,
chr21:44500000-44525000~~chr21:45125000-45150000,
chr21:44575000-44600000~~chr21:45125000-45150000,
chr21:44775000-44800000~~chr21:45125000-45150000,
chr21:44800000-44825000~~chr21:45125000-45150000,
chr21:44850000-44875000~~chr21:45125000-45150000,
chr21:44875000-44900000~~chr21:45125000-45150000,
chr21:44925000-44950000~~chr21:45125000-45150000,
chr21:44950000-44975000~~chr21:45125000-45150000,
chr21:44975000-45000000~~chr21:45125000-45150000,
chr21:45000000-45025000~~chr21:45125000-45150000,
chr21:45125000-45150000~~chr21:45225000-45250000,
chr21:45125000-45150000~~chr21:45250000-45275000,
chr21:45125000-45150000~~chr21:45275000-45300000,
chr21:45125000-45150000~~chr21:45300000-45325000,
chr21:45125000-45150000~~chr21:45325000-45350000,
chr21:45125000-45150000~~chr21:45425000-45450000,
chr21:45125000-45150000~~chr21:45450000-45475000,
chr21:45125000-45150000~~chr21:45500000-45525000,
chr21:45125000-45150000~~chr21:45525000-45550000,
chr21:45125000-45150000~~chr21:45550000-45575000,
chr21:45125000-45150000~~chr21:45575000-45600000,
chr21:45125000-45150000~~chr21:45750000-45775000,
chr21:45125000-45150000~~chr21:45800000-45825000,
chr21:45125000-45150000~~chr21:45825000-45850000,
chr21:45125000-45150000~~chr21:45875000-45900000,
chr21:45125000-45150000~~chr21:45900000-45925000,
chr21:45125000-45150000~~chr21:46100000-46125000,
chr21:45150000-45175000~~chr21:45250000-45275000,
chr21:45150000-45175000~~chr21:45275000-45300000,
chr21:45150000-45175000~~chr21:45425000-45450000,
chr21:45150000-45175000~~chr21:45450000-45475000,
chr21:45150000-45175000~~chr21:45725000-45750000,
chr21:45150000-45175000~~chr21:45800000-45825000,
chr21:45151104-45153330~~chr21:45269360-45271607,
chr21:45151182-45153539~~chr21:45307919-45309932,
chr21:45151182-45153539~~chr21:45438127-45440654,
chr21:45151234-45153330~~chr21:45438098-45440775,
chr21:45151445-45153499~~chr21:45438460-45440575,
chr21:45151535-45153313~~chr21:45235859-45237361,
chr21:45151610-45153626~~chr21:45438417-45440836,
chr21:45151733-45153242~~chr21:45308637-45309801,
chr21:45151747-45153264~~chr21:45438277-45440446,