- Basic information
- CohesinDB ID: CDBP00421215
- Locus: chr21-45180932-45181355
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Data sourse: GSE206145-NatGen2015, GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, Fibroblast, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
85% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"4_Tx": 46%,
"5_TxWk": 39%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, FOXO1, PGR, FOXA2, MYCN, TOP2A, SOX2, ZFX, SIN3A, GTF2B, ZBTB48, WT1, ZBTB17, FOXA1, LEO1, HOXB13, ERG, RELA, ZNF384, BRG1, GATA4, RUNX3, SP140, ARNT, ZIC2, PRDM9, GABPA, TAL1, NKX3-1, GATA1, FOS, TLE3, NR3C1, TERF1, PIAS1, ESR1, GRHL2, PHOX2B, CTCF, JUN, BAF155, MNT, AR, GATA2, ARID1A, HSF1, ASH2L, BRD4, FOXP1, MAZ, ZNF528, STAG1, FOSL2
- Target gene symbol (double-evidenced CRMs): ADARB1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops