- Basic information
- CohesinDB ID: CDBP00421217
- Locus: chr21-45184914-45185224
-
Data sourse: GSE86191
-
Cell type: HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
85% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"4_Tx": 65%,
"5_TxWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RUNX1, TRIM25, POU2F2, CHD8, ZSCAN5D, MYCN, ZFX, XBP1, ZBTB48, WT1, TET2, YY1, RELA, ATF3, MYC, SP140, GRHL3, NRIP1, ZNF143, DNMT3B, NCOA3, EZH2, ESR1, ZNF334, CTCF, BCL11A, AR, BRD4, MAZ, SMC3, AHR
- Target gene symbol (double-evidenced CRMs): ADARB1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 190
- Number of somatic mutations (non-coding): 38
- Related genes and loops