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Basic information

CohesinDB ID: CDBP00421230

Locus: chr21-45218184-45218795

Data sourse: ENCSR153HNT, GSE73207

Cell type: K-562, TF-1

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,SMC3

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 85% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "5_TxWk": 53%, "15_Quies": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: CHD8, POU5F1, MTA3, TOP2A, ZFX, XBP1, GTF2B, DUX4, STAT1, ERG, RUNX2, MYC, PRDM1, ARNT, GABPA, PAX5, MAX, SP2, CEBPB, NCOA3, ZNF512, EZH2, TP53, ZFP91, BRD2, BCL11A, SPI1, PAX8, GATA2, RNF2, BRD4, SMARCA5, AHR, FOSL2

Target gene symbol (double-evidenced CRMs): ADARB1,PCBP3,TRPM2,TSPEAR,FAM207A,COL18A1,COL6A2

Function elements

Human SNPs: .

Number of somatic mutations (coding): 25

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000142185, ENSG00000175894, ENSG00000160256, ENSG00000197381, ENSG00000182871, ENSG00000183570, ENSG00000142173,

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Deatailed information for cohesin site CDBP00421230