- Basic information
- CohesinDB ID: CDBP00421238
- Locus: chr21-45232337-45232746
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
85% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 42%,
"15_Quies": 35%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, PGR, MEIS2, XBP1, FOXA1, SUZ12, RBFOX2, RXRB, PBX2, ZNF28, TFAP4, ATF3, NFIC, RUNX3, CBFB, SMARCE1, PAX5, TP63, MITF, ZNF736, ZNF780A, ELF1, TRIM28, ETV1, SNAI2, LMO2, ESR1, OCA2, CTCF, TCF12, JUN, POU2F1, EP300, BAF155, KLF1, GATA6, E2F6, SOX6, DEK, E2F1, TEAD4, EHMT2, TFAP2C, POU2F2, CHD8, BRD1, ZSCAN5D, POU5F1, MYCN, TOP2A, KDM4C, ZNF263, CTBP1, RUNX1T1, ZBTB48, ZNF205, SAP130, ARID3A, ZNF300, ERG, OGG1, MYC, EZH1, SMARCA4, ARID1B, RAD21, GRHL3, NKX2-1, GABPA, STAT3, XRCC5, NKX3-1, NFE2, DNMT3B, RCOR1, ARNTL, VDR, NR3C1, SRSF3, CREB1, EZH2, TBL1XR1, GABPB1, ZHX2, SPI1, ZNF257, HDAC2, GATA2, MXD3, FLI1, ZNF777, NCOA2, RUNX1, BCL6, MAFG, HDAC1, EZH2phosphoT487, SMC1A, CBX1, ZFX, POU4F2, SMAD3, TET2, CBX8, ERG3, RARA, CREBBP, ZBTB2, ZNF133, ZNF169, RUNX2, CDK6, ARNT, NRF1, ATF2, PRDM9, ZEB2, NFYA, ETV6, NCAPH2, CBFA2T3, FOS, CDK8, TEAD3, PML, KDM6B, MYB, PIAS1, SMAD1, ZNF3, C11orf30, SETDB1, STAT5A, KLF16, MAFK, BCL11A, GSPT2, REST, ARID1A, POU2F3, ASH2L, HNRNPLL, HOXA9, FOXP1, AATF, SMC3, STAG1, STAG2, TRP47, CBFA2T2, ZNF316, FOXA2, AGO1, CREM, TBL1X, GTF2B, WT1, MAFF, ESR2, ZBTB33, MEF2C, HOXB13, ZNF580, KDM1A, YY1, RELA, SP140, ZIC2, HIF1A, TCF4, ZFP36, OTX2, GATA3, BHLHE22, TAL1, MAX, ZNF449, ZNF143, GATA1, NRIP1, CBX2, TLE3, GFI1B, NR2F2, NCOA3, NR2F1, KDM5B, TP53, PKNOX1, ZNF334, PHOX2B, BRD2, ARRB1, TBX21, AR, ZBTB40, RXR, HEXIM1, EGR1, TFIIIC, HSF1, RNF2, NCOR1, ZNF248, BRD4, JUND, ZBTB26, CUX1, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): ADARB1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops