- Basic information
- CohesinDB ID: CDBP00421244
- Locus: chr21-45245728-45247493
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Data sourse: GSE67783, GSE86191, GSE111913, GSE206145, ENCSR153HNT
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Cell type: RPE, HCT-116, RT-112, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
85% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 46%,
"15_Quies": 31%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRIM25, SOX2, MEIS2, NME2, XBP1, PATZ1, FOXA1, HLF, PBX2, UBTF, ZFHX2, ATF3, NFIC, CHD7, SFPQ, TEAD1, TRIM28, ZNF121, SNAI2, SAP30, ESR1, JUN, CTCF, E2F6, TEAD4, PDX1, TFAP2C, GLIS1, CHD8, MYCN, ZNF263, TOP2A, ID3, POU5F1, BRD3, ZBTB17, DUX4, ZBTB48, ERG2, SP4, OGG1, EZH1, ONECUT1, SMARCA4, RFX1, MYC, RAD21, GRHL3, RXRA, GABPA, XRCC5, IKZF1, MIER3, NR2F6, CEBPB, CREB1, EZH2, ZNF652, EBF3, GABPB1, ZNF257, FLI1, MXI1, SMARCA5, ZNF490, ETV5, PTBP1, RUNX1, SMC1A, SIN3A, ZFX, SMAD3, TET2, ERG3, CBX8, ZNF770, PRDM10, CREBBP, RUNX2, OSR2, ARNT, ATF2, ZNF10, FOS, CDK8, MED1, ZEB1, TEAD3, ZMYM3, L3MBTL2, USF1, BCL11A, IKZF5, ZNF479, RBM25, ATF7, ASH2L, HNRNPLL, BCOR, SMC3, STAG1, FOXA2, RBBP5, ZNF600, WT1, ZNF662, CDK9, HOXB13, KDM1A, YY1, RELA, SP140, ZIC2, ZFP36, HIF1A, OTX2, MAX, GATA1, ZNF143, CBX2, PLAG1, NR2F1, NEUROG2, TP53, EGR2, BRD2, KAT8, TAF1, ZBTB42, HSF1, RNF2, BRD4, JUND, CUX1, MAZ, ZNF440, AHR
- Target gene symbol (double-evidenced CRMs): ADARB1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops