- Basic information
- CohesinDB ID: CDBP00421253
- Locus: chr21-45285295-45286241
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Data sourse: GSE67783, GSE86191, GSE116868, GSE206145, GSE206145-NatGen2015, ENCSR153HNT
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Cell type: RPE, Fibroblast, HCT-116, MB157, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
83% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"4_Tx": 52%,
"5_TxWk": 31%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, TRIM25, FOSL1, SOX2, XBP1, ZNF101, SUZ12, RBFOX2, LEO1, HDGF, ZNF90, ATF3, THAP1, CBFB, MECOM, TP63, ZNF467, CDX2, MYOG, ELF1, RBM39, LMO2, ESR1, OCA2, TP73, HDAC8, CTCF, JUN, TCF12, ZNF157, DPF2, E2F4, RAD51, TEAD4, RBPJ, EED, TFAP2C, POU2F2, CHD8, BRD1, ZSCAN5D, MYCN, ZNF263, RUNX1T1, TOP2A, POU5F1, ZBTB48, ZSCAN5A, STAT1, DDX5, ERG2, TBP, ERG, PBX1, ASCL1, OGG1, ETS1, MYC, SMARCA4, ARID1B, RAD21, FOXP2, GRHL3, STAT3, XRCC5, IKZF1, DNMT3B, HNRNPH1, NR3C1, CEBPB, HNRNPL, CREB1, EZH2, GRHL2, GABPB1, ZHX2, IRF1, GATA2, MXD3, FLI1, HCFC1R1, MYF5, ETV5, RUNX1, BCL6, SMC1A, HDAC1, LDB1, CEBPA, SIN3A, ZFX, TET2, ERG3, ZNF384, TAF15, CDK6, ZNF48, PRDM9, CBFA2T3, NCAPH2, FOS, CDK8, SUPT5H, SNRNP70, CHD1, TEAD3, ZEB1, KDM6B, ZNF558, ZNF3, SREBF2, RBM22, USF1, ARID2, REST, HNRNPLL, TCF3, GLIS2, AATF, SMC3, STAG1, TRP47, CBFA2T2, ZNF283, AGO1, FOXA2, PAF1, ZNF600, WT1, ZNF662, ZBTB33, YY1, RELA, TARDBP, SP140, ZIC2, HIF1A, TCF4, TAL1, MAX, ZNF143, AGO2, PLAG1, CEBPG, NR2F1, NEUROG2, KDM5B, TP53, ZNF334, MYOD1, EGR2, BHLHE40, AR, ZNF445, RXR, HEXIM1, EGR1, TFIIIC, HSF1, ZBTB26, BRD4, JUND, CLOCK, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): TRAPPC10,SLC19A1,POFUT2,COL18A1,ADARB1,ITGB2-AS1,FAM207A,PCBP3,ITGB2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 207
- Number of somatic mutations (non-coding): 69
- Related genes and loops
- Related gene:
ENSG00000160218,
ENSG00000160255,
ENSG00000227039,
ENSG00000160256,
ENSG00000197381,
ENSG00000186866,
ENSG00000182871,
ENSG00000173638,
ENSG00000183570,
- Related loop:
chr21:44075000-44100000~~chr21:45275000-45300000,
chr21:44925000-44950000~~chr21:45275000-45300000,
chr21:44950000-44975000~~chr21:45275000-45300000,
chr21:45125000-45150000~~chr21:45275000-45300000,
chr21:45139756-45141227~~chr21:45286276-45287465,
chr21:45150000-45175000~~chr21:45275000-45300000,
chr21:45275000-45300000~~chr21:45425000-45450000,
chr21:45275000-45300000~~chr21:45450000-45475000,
chr21:45275000-45300000~~chr21:45550000-45575000,
chr21:45275000-45300000~~chr21:45800000-45825000,
chr21:45275000-45300000~~chr21:45825000-45850000,