- Basic information
- CohesinDB ID: CDBP00421261
- Locus: chr21-45341176-45342108
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Data sourse: ENCSR000BTU, GSE67783, ENCSR230ZWH, GSE72082, GSE86191, GSE206145, GSE206145-NatGen2015, ENCSR054FKH, ENCSR153HNT, GSE68388
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Cell type: RPE, Fibroblast, HCT-116, Hep-G2, Ishikawa, K-562, Liver, HSPC, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
83% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 34%,
"14_ReprPCWk": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, TRIM25, HMG20A, ZNF660, SOX2, XBP1, FOXA1, SUZ12, RXRB, MLL4, ATF3, NFIC, ZBTB44, CHD7, PRDM1, MORC2, MXD4, PAX5, TP63, ZNF736, ELF1, TEAD1, TRIM28, ETV1, RCOR2, ESR1, LMO2, OCA2, ZNF561, CTCF, JUN, TCF12, EP300, MNT, SOX5, E2F6, RFX5, E2F4, TEAD4, FOXA3, GATAD2A, RBPJ, TFAP2C, GLIS1, POU2F2, CHD8, ZNF263, MYCN, ZNF317, ZBTB48, ZSCAN5A, STAT1, GATAD1, SAP130, ERG, OGG1, ZBTB8A, ETS1, MYC, MCM5, SMARCA4, EZH1, HOMEZ, RAD21, GRHL3, PROX1, GABPA, STAT3, ZNF614, XRCC5, NKX3-1, IKZF1, DNMT3B, NR2F6, NR3C1, CEBPB, CREB1, EZH2, FEZF1, GABPB1, MIXL1, TFE3, EHF, MXD3, FLI1, DRAP1, ZGPAT, MRTFB, NFIL3, ETV5, RUNX1, THAP11, BCL6, CEBPA, SOX13, ZFX, ZNF534, FIP1L1, TET2, SP5, SMARCC1, PRDM10, CREBBP, ZNF35, ZNF384, CDK6, ARNT, PBX4, ZNF48, SMAD4, FOXM1, FOS, HMGXB4, TEAD3, CEBPD, SCRT2, ZNF331, SETDB1, USF1, BCL11A, ARID2, REST, ZBTB7A, IKZF5, ASH2L, PHIP, FOXP1, PRDM6, AATF, ZNF337, SMC3, NCOR2, STAG1, NFATC3, TRP47, PPARG, FOXA2, MIER2, ZNF600, ZSCAN16, WT1, ZBTB33, CDK9, ZNF580, KDM1A, YY1, RELA, JUNB, AHR, BRG1, MCM3, SP140, ZIC2, HIF1A, MAX, ZNF143, PLAG1, CEBPG, NCOA3, NR2F1, TP53, NFKB1, PHOX2B, ELF3, KAT8, ARID4B, AR, RXR, EGLN2, EGR1, HEXIM1, HSF1, ZBTB26, NCOR1, BRD4, MAZ, DMAP1
- Target gene symbol (double-evidenced CRMs): FAM207A,COL6A2,PFKL,PTTG1IP,TRPM2,CFAP410,MCM3AP-AS1,COL18A1,UBE2G2,SUMO3,TSPEAR,PCBP3,SLC19A1,ADARB1,LSS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene:
ENSG00000141959,
ENSG00000160226,
ENSG00000142185,
ENSG00000175894,
ENSG00000184787,
ENSG00000184900,
ENSG00000183255,
ENSG00000160256,
ENSG00000197381,
ENSG00000182871,
ENSG00000173638,
ENSG00000183570,
ENSG00000142173,
ENSG00000160285,
ENSG00000215424,
- Related loop:
chr21:43350000-43375000~~chr21:45325000-45350000,
chr21:44325000-44350000~~chr21:45325000-45350000,
chr21:44475000-44500000~~chr21:45325000-45350000,
chr21:44500000-44525000~~chr21:45325000-45350000,
chr21:44650000-44675000~~chr21:45325000-45350000,
chr21:44800000-44825000~~chr21:45325000-45350000,
chr21:44850000-44875000~~chr21:45325000-45350000,
chr21:44975000-45000000~~chr21:45325000-45350000,
chr21:45000000-45025000~~chr21:45325000-45350000,
chr21:45125000-45150000~~chr21:45325000-45350000,
chr21:45200000-45225000~~chr21:45325000-45350000,
chr21:45225000-45250000~~chr21:45325000-45350000,
chr21:45325000-45350000~~chr21:45425000-45450000,
chr21:45325000-45350000~~chr21:45450000-45475000,
chr21:45325000-45350000~~chr21:45500000-45525000,
chr21:45325000-45350000~~chr21:45550000-45575000,
chr21:45325000-45350000~~chr21:45675000-45700000,
chr21:45325000-45350000~~chr21:45725000-45750000,
chr21:45325000-45350000~~chr21:45750000-45775000,
chr21:45325000-45350000~~chr21:45800000-45825000,
chr21:45325000-45350000~~chr21:45875000-45900000,
chr21:45325000-45350000~~chr21:45900000-45925000,
chr21:45325000-45350000~~chr21:45925000-45950000,
chr21:45325000-45350000~~chr21:46050000-46075000,
chr21:45325000-45350000~~chr21:46100000-46125000,
chr21:45325000-45350000~~chr21:46200000-46225000,