- Basic information
- CohesinDB ID: CDBP00421264
- Locus: chr21-45370583-45371498
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Data sourse: GSE67783, GSE86191, GSE111913, GSE206145, ENCSR153HNT, GSE111537
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Cell type: RPE, HCT-116, RT-112, K-562, OCI-AML-3, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES,Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
83% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 42%,
"14_ReprPCWk": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, MEIS2, XBP1, FOXA1, HLF, PBX2, ATF3, RUNX3, ATF4, PAX5, TP63, MITF, JMJD1C, KLF5, TEAD1, TRIM28, KLF6, SNAI2, NFE2L2, LMO2, ESR1, OCA2, TP73, CTCF, JUN, TCF12, EP300, E4F1, MNT, GATA6, E2F6, TRIM24, E2F1, ZNF280A, TEAD4, TFAP2C, BRD1, MYCN, POU5F1, ZNF263, ID3, TOP2A, ZNF317, ZBTB48, STAT1, SAP130, NBN, SP4, ERG, HOXC5, PBX1, MIER1, OGG1, ZNF341, MYC, RFX1, RAD21, GRHL3, GABPA, STAT3, XRCC5, ZNF614, PRDM14, IKZF1, NFE2, TERF2, DNMT3B, NR3C1, CEBPB, CREB1, GRHL2, ZHX2, SPI1, IRF1, KLF17, HCFC1R1, NFIL3, ZNF554, ATF1, PTBP1, RUNX1, MAFG, SMC1A, CEBPA, SIRT6, SIN3A, ZFX, SMAD3, TET2, ERG3, TRIM22, SMARCC1, PRDM10, CREBBP, PRPF4, RARA, RUNX2, ARNT, BACH1, NRF1, ATF2, ZNF48, SMAD4, FOXM1, NR2C1, FOS, CDK8, TEAD3, ZNF3, C11orf30, L3MBTL2, SETDB1, USF1, BCL11A, MAFK, SP1, ARID2, ZBTB7A, ARID1A, ATF7, POU2F3, TCF3, GLIS2, AATF, SMC3, STAG1, TRP47, CBFA2T2, ZNF283, AGO1, CBX3, CREM, FOXA2, EBF1, ZNF600, WT1, ZBTB33, CDK9, HOXB13, KDM1A, YY1, RELA, TARDBP, JUNB, SP140, ZFP36, HIF1A, OTX2, MGA, TAL1, MAX, ZNF143, MTA1, PLAG1, CEBPG, KLF4, SP7, NR2F1, TP53, PKNOX1, MED, ZNF334, ZSCAN22, MYOD1, TBX21, BHLHE40, AR, ZNF366, HSF1, RNF2, IKZF2, JUND, BRD4, MAZ, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): PCBP3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 8
- Related genes and loops