- Basic information
- CohesinDB ID: CDBP00421267
- Locus: chr21-45377752-45389221
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Data sourse: ENCSR230ZWH, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR917QNE, GSE115602, GSE93080, GSE67783, GSE86191, GSE101921, ENCSR806UKK, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, GSE118494, ENCSR000EEG, ENCSR338DUC, ENCSR247LSH, ENCSR676MJK, ENCSR054FKH, GSE83726, ENCSR748MVX, ENCSR000ECS, GSE38411, ENCSR000BLD, GSE126634, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, ShirahigeLab, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE25021, GSE76893, GSE145327, GSE76815, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, ShirahigeLab-GSE177045, GSE72082, ENCSR501LQA, GSE116868, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000BKV, GSE152721, ShirahigeLab-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, ENCSR981FDC, ENCSR807WAC, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR153HNT, GSE68388, GSE126990
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Cell type: RH4, SLK, CVB-hiPSC, HSPC, CVI-hiPSC, Liver, HuCC-T1, H9-hESC, RPE, GM2630, HMEC, Fibroblast, HEKn, Ishikawa, GM12890, HeLa-S3, IMR-90, BCBL-1, K-562, DKO, HFFc6, H1-hESC, MB157, GM12878, GM12891, SK-N-SH, RT-112, HeLa-Tet-On, THP-1, HUES64, MCF-7, GM12892, Hela-Kyoto, HCT-116, HEK293T, Hep-G2, A-549, HUVEC, HCAEC, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 51% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.556
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TSS,TES,Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
83% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 23%,
"7_Enh": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, NME2, ZNF616, FOXA1, RXRB, MLL4, KDM3A, ZBTB7B, HDGF, THAP1, TEAD1, OCA2, ZNF507, E4F1, SOX5, PAX8, ZNF211, ZNF674, GATAD2A, JARID2, NANOG, ZNF263, POU5F1, TOP2A, CTBP1, STAT1, SAP130, ERG, SMARCA4, RFX1, RCOR1, NR2F6, CEBPB, HNRNPL, CREB1, BMPR1A, GABPB1, ZHX2, MIXL1, GATA2, MXD3, SIX2, FLI1, DRAP1, HCFC1, MXI1, RUNX1, HDAC1, CRY1, TET2, SP5, TRIM22, SMARCC1, PRDM10, ZBTB2, ZXDC, ATF2, FOXM1, SMARCB1, IKZF5, ARID2, ZNF605, MBD2, ELL2, ETV4, NFATC3, CBFA2T2, ZNF207, CHD2, SS18, WT1, JUNB, NEUROD1, MCM3, PLAG1, KLF4, EGR2, ELF3, ARID4B, RXR, EGLN2, HSF1, ZBTB26, NCOR1, SCRT1, ILF3, ZNF316, FOSL1, XBP1, KDM4B, PBX2, ATF3, THRB, ZFP64, CBFB, TP63, MITF, ELF1, RBM39, SNAI2, CTCF, JUN, MNT, DPF2, MED12, TFAP2C, RBPJ, MTA2, ZBTB17, ZBTB48, SRF, HOMEZ, FOXP2, RXRA, PRDM14, MIER3, HNRNPH1, VDR, NR3C1, ESRRA, KMT2A, GRHL2, ZSCAN29, NFIL3, THAP11, LDB1, SOX13, AFF4, POU4F2, ARNT, NFIB, DAXX, ZNF48, NFYA, PBX3, ZNF10, HMGXB4, TEAD3, USF1, SP1, BCL11A, TFAP2A, NKX2-5, ZNF479, ATF7, ASH2L, ZNF548, CTBP2, SMC3, STAG1, STAG2, TRP47, AGO1, MTA3, EBF1, MAFF, ESR2, ZNF580, ZKSCAN1, BCL3, KDM1A, BRG1, ZIC2, GATA3, TAL1, NRIP1, ZNF143, MTA1, AGO2, TP53, ZNF334, PHOX2B, PHF5A, BRD2, KAT8, TFIIIC, RNF2, JUND, BRD4, CUX1, ZNF468, PGR, SOX2, TFAP4, BMI1, CHD7, MXD4, KLF6, NFE2L2, ZNF217, ESR1, ZNF524, KLF1, E2F6, TRIM24, PRKDC, GTF2F1, POU2F2, ZSCAN5D, ZSCAN5A, ERG2, SP4, TBP, HOXC5, OGG1, ETS1, MYC, ARID1B, NKX2-1, GABPA, STAT3, IKZF1, DNMT3B, EZH2, PHF8, SPI1, HDAC2, GATAD2B, NCOA2, NFYB, ETV5, BCL6, SIN3A, ERG3, CREBBP, NFYC, RARA, ZNF384, TAF15, SMAD4, CBFA2T3, ZEB1, ZMYM3, NCOA1, MAFK, NR4A1, REST, ARID1A, HNRNPLL, BCOR, FOXP1, AATF, PPARG, GTF2B, ZNF662, RELA, TARDBP, MAX, ZNF592, GFI1B, TCF7L2, NR2F1, KDM5B, NEUROG2, PKNOX1, MYOD1, AR, PAX3-FOXO1, YAP1, HEXIM1, DMAP1, AHR, MBD3, FOSL2, SUZ12, RBFOX2, NFIC, CTCFL, KLF5, TRIM28, RCOR2, HNF1B, USF2, TCF12, EP300, RAD51, E2F1, SMC1, TEAD4, FOXA3, EHMT2, CHD8, BRD1, SRC, MYCN, ID3, GATAD1, ARID3A, ZNF300, RAD21, GRHL3, XRCC5, ZNF614, NFE2, TRPS1, TFE3, IRF1, SREBF1, ZGPAT, MRTFB, ATF1, PTBP1, CBX1, SMC1A, MAFG, SIRT6, ZFX, SMAD3, TWIST1, RUNX2, SMAD2, GATA4, GR, PBX4, FOS, CHD1, MED1, KDM6B, CEBPD, ZNF3, SETDB1, NIPBL, ZBTB7A, POU2F3, PHIP, TCF3, PAX7, FOXA2, RBBP5, ZNF600, MIER2, ZBTB33, CDK9, HOXB13, YY1, SP140, HIF1A, ZNF449, GATA1, HAND2, CEBPG, NCOA3, NR2F2, ZNF687, BHLHE40, NFKBIZ, TAF1, ZNF579, ZBTB42, MYNN, CLOCK, MAZ
- Target gene symbol (double-evidenced CRMs): COL18A1,TRAPPC10
- Function elements
- Human SNPs: Waist-hip_ratio
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 89
- Related genes and loops