- Basic information
- CohesinDB ID: CDBP00421268
- Locus: chr21-45390007-45394664
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Data sourse: GSE67783, GSE86191, GSE111913, GSE206145, GSE206145-NatGen2015, ENCSR153HNT, GSE131606
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Cell type: RPE, Fibroblast, HCT-116, RT-112, K-562, HSPC, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
83% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 45%,
"15_Quies": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, TRIM25, FOSL1, ZNF675, NME2, FOXA1, SUZ12, PBX2, ATF3, ZBTB5, CBFB, TP63, TRIM28, RBM39, LMO2, ESR1, OCA2, CTCF, GATA6, GTF2F1, JARID2, POU2F2, ZSCAN5D, ZNF263, MYCN, ID3, ZBTB17, ZBTB48, ZSCAN5A, STAT1, ERG2, TBP, ERG, HOXC5, OGG1, ZNF341, EZH1, GRHL3, FOXK2, GABPA, STAT3, XRCC5, IKZF1, DNMT3B, CEBPB, SRSF3, EZH2, ZNF652, GABPB1, ZHX2, PCBP1, GATA2, MXD3, SIX2, HCFC1R1, ETV5, RUNX1, SMC1A, SIRT6, ZFX, TET2, CBX8, ERG3, ZNF384, TAF15, RUNX2, ARNT, ZNF48, NCAPH2, CHD1, KDM6B, SETDB1, ZBTB7A, MBD2, AATF, STAG1, TRP47, CBFA2T2, FOXA2, AGO1, ZNF600, WT1, CDK9, HOXB13, YY1, RELA, MCM3, SP140, ZFP36, HIF1A, MAX, ZNF143, PLAG1, NR2F1, KDM5B, ZNF334, NFKB1, AR, RXR, HEXIM1, TFIIIC, HSF1, BRD4, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): TRAPPC10
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 35
- Related genes and loops