- Basic information
- CohesinDB ID: CDBP00421269
- Locus: chr21-45395800-45396908
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Data sourse: GSE67783, GSE86191, ENCSR000BKV, GSE111913, ENCSR153HNT
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Cell type: K-562, RT-112, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
83% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 50%,
"15_Quies": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, CHD8, TOP2A, ID3, ZFX, SOX13, MTA2, XBP1, ZBTB48, CTBP1, ZNF600, FOXA1, DUX4, WT1, ERG3, SAP130, SP5, ERG2, CBX8, ZNF205, ZFHX2, ERG, RELA, RARA, CREBBP, BMI1, MYC, ONECUT1, SMARCA4, GRHL3, HIF1A, ZFP36, ARNT, SMAD4, GABPA, CBFA2T3, MAX, XRCC5, FOS, IKZF1, ZNF143, NR2F6, CBX2, NR3C1, TEAD3, NCOA3, NEUROG2, EZH2, TP53, ESR1, L3MBTL2, ZNF334, MYOD1, EGR2, CTCF, MAFK, ZNF317, TBX21, BHLHE40, ARID4B, MIXL1, AR, DPF2, HDAC2, GATA2, E2F6, EGR1, ZBTB26, RNF2, NFIL3, ZNF175, GATAD2A, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): TRAPPC10
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops