- Basic information
- CohesinDB ID: CDBP00421276
- Locus: chr21-45485639-45487680
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Data sourse: GSE67783, GSE86191, GSE116868, GSE111913, GSE206145-NatGen2015, ENCSR153HNT, GSE131606
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Cell type: Fibroblast, HCT-116, MB157, RT-112, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
83% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 51%,
"4_Tx": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, ZNF468, FOSL1, TRIM25, E2F7, SOX2, PATZ1, SUZ12, RBFOX2, ZNF28, ZFHX2, HNRNPK, HDGF, ATF3, ZFP64, THAP1, ZBTB44, CHD7, CBFB, ZNF189, TP63, CDC5L, ZNF467, JMJD1C, MAF, KLF5, RBM39, SNAI2, LMO2, ESR1, CTCF, DPF2, TRIM24, ZNF528, TEAD4, GTF2F1, RBPJ, TFAP2C, GLIS1, NANOG, ZSCAN5D, MYCN, ZNF263, POU5F1, TOP2A, ZBTB48, STAT1, SRF, TBP, ZNF300, ERG, OGG1, ZNF341, MYC, KDM4A, RAD21, GRHL3, GABPA, STAT3, XRCC5, ZNF614, PRDM14, DNMT3B, HNRNPH1, HNRNPL, KMT2A, EZH2, BMPR1A, GRHL2, FEZF1, GABPB1, ZHX2, SPI1, ZNF257, KLF17, PCBP1, ZNF182, MXD3, HCFC1R1, ZNF76, ETV5, RUNX1, BCL6, SIRT6, ZFX, SMAD3, ERG3, CREBBP, ZNF35, NOTCH1, TAF15, ARNT, ZNF48, ATF2, SMAD4, PRDM9, NCAPH2, SUPT5H, FOS, CHD1, TEAD3, KDM6B, ZNF264, ZNF558, SMAD1, ZNF3, RBM22, ARID2, ZBTB7A, ASH2L, HNRNPLL, GLIS2, BCOR, AATF, STAG1, CXXC4, NFATC3, TRP47, CBFA2T2, FOXA2, AGO1, RBBP5, EBF1, PAF1, CHD2, ZNF600, ZNF692, ZSCAN16, WT1, ZNF30, ZBTB33, CDK9, KDM1A, YY1, RELA, TARDBP, BRG1, MCM3, SP140, ZIC2, HIF1A, MAX, ZNF143, AGO2, PLAG1, ZFP69B, BCL11B, TCF7L2, KDM5B, TP53, ZNF334, AR, RXR, HEXIM1, EGR1, RB1, HSF1, ZBTB26, TFIIIC, SCRT1, BRD4, MAZ, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): COL18A1
- Function elements
- Human SNPs: Alzheimer_disease_and_age_of_onset
- Number of somatic mutations (coding): 222
- Number of somatic mutations (non-coding): 74
- Related genes and loops