- Basic information
- CohesinDB ID: CDBP00421289
- Locus: chr21-45585913-45586455
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Data sourse: ENCSR153HNT
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Cell type: K-562
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"9_Het": 74%,
"14_ReprPCWk": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, CBX3, ZSCAN5C, ZFX, MEIS2, MTA2, ZSCAN21, SMAD3, ZSCAN5A, ZNF30, STAT1, ZNF823, PBX2, ZNF529, ERG, YY1, ZNF318, RELA, ZBTB21, KDM1A, NOTCH1, JUNB, ATF3, ZNF626, SMARCA4, ZNF510, ZNF184, ZNF610, SP3, ZFP36, ZNF155, KLF14, NKX2-1, ZSCAN23, ZNF518A, ZNF189, TAL1, STAT3, FOS, CDK8, RCOR1, ZNF639, ZNF629, SP7, TRIM28, ZNF121, ZNF558, ZMYM3, NFE2L2, PIAS1, TP53, KLF8, PKNOX1, ZNF213, KLF9, SETDB1, JUN, USF1, SPI1, KLF1, AR, KLF17, DPF2, ZBTB40, HDAC2, ZNF324, ZBTB7A, RBM25, TRIM24, ZNF146, POU2F3, FLI1, ZNF280D, JUND, BCOR, ZNF350, ZNF280A, ZNF34, FOSL2
- Target gene symbol (double-evidenced CRMs): ADARB1,PCBP3,COL6A2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 8
- Related genes and loops
- Related gene:
ENSG00000197381,
ENSG00000183570,
ENSG00000142173,
- Related loop:
chr21:45125000-45150000~~chr21:45575000-45600000,
chr21:45554287-45556968~~chr21:45590787-45592560,
chr21:45575000-45600000~~chr21:45725000-45750000,
chr21:45575000-45600000~~chr21:45800000-45825000,
chr21:45575000-45600000~~chr21:45900000-45925000,
chr21:45575000-45600000~~chr21:45925000-45950000,
chr21:45575000-45600000~~chr21:46100000-46125000,