- Basic information
- CohesinDB ID: CDBP00421301
- Locus: chr21-45621513-45621723
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Data sourse: GSE206145-GSE177045
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 55%,
"15_Quies": 32%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, NFATC3, CBX1, EZH2phosphoT487, LDB1, TOP2A, MYCN, ZFX, POU4F2, MEIS2, MTA2, CTBP1, ZBTB48, WT1, FOXA1, CBX8, PBX2, TRIM22, HOXB13, ERG, RELA, ZNF384, NEUROD1, ZFP64, ARNT, OTX2, GABPA, DPF1, STAT3, NRIP1, NKX3-1, IKZF1, MITF, ZNF143, CBX2, PLAG1, SP7, SCRT2, PIAS1, NR2F1, EZH2, ZNF3, ESR1, PKNOX1, ZNF687, GRHL2, ZNF334, USF2, PHOX2B, CTCF, ZNF507, TCF12, BAF155, USF1, TBX21, ZBTB20, BHLHE40, AR, DPF2, GATA2, ZNF146, ATF7, RB1, ASH2L, RNF2, RAD51, BRD4, SCRT1, SMARCA5, ILF3, MAZ, RELB, MLLT1
- Target gene symbol (double-evidenced CRMs): COL6A2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops