- Basic information
- CohesinDB ID: CDBP00421303
- Locus: chr21-45624026-45624707
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Data sourse: GSE67783, ENCSR153HNT, GSE68388
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Cell type: K-562, HSPC, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 47%,
"15_Quies": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, GLIS1, TRP47, POU2F2, CHD8, MYCN, EZH2phosphoT487, ZNF263, ID3, ZFX, ZNF600, WT1, ZBTB48, TET2, TBP, ERG, YY1, RELA, CREBBP, OGG1, ATF3, MYC, BRG1, MCM3, SP140, GRHL3, NKX2-1, STAT3, CHD1, CBX2, ZNF467, ELF1, TRIM28, NR2F1, EZH2, ESR1, OCA2, CTCF, BCL11A, GSPT2, AR, RXR, ZNF479, HEXIM1, HSF1, BRD4, MAZ, AATF, SMC3, TFAP2C
- Target gene symbol (double-evidenced CRMs): COL6A2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops